Article

Decraene, James and McMullin, Barry ORCID: 0000-0002-5789-2068 (2011) The Evolution of complexity in self-maintaining cellular information processing networks. Advances in Complex Systems, 14 (1). pp. 55-75. ISSN 0219-5259

McMullin, Barry ORCID: 0000-0002-5789-2068 (2009) Artificial life meets computational creativity? Dagstuhl Seminar Proceedings, 09291 . ISSN 1862 - 4405

Thesis

Baugh, Declan (2015) Implementing von Neumann’s architecture for machine self reproduction within the tierra artificial life platform to investigate evolvable genotype-phenotype mappings. PhD thesis, Dublin City University.

Hasegawa, Tomonori (2015) On the evolution of genotype-phenotype mapping: exploring viability in the Avida articial life system. PhD thesis, Dublin City University.

Kelly, Ciarán (2010) Design and Characterisation of a Novel Artificial Life System Incorporating Hierarchical Selection. PhD thesis, Dublin City University.

Decraene, James (2009) Autocatalytic closure and the evolution of cellular information processing networks. PhD thesis, Dublin City University.

Conference or Workshop Item

Hasegawa, Tomonori and McMullin, Barry ORCID: 0000-0002-5789-2068 (2013) Analysing the mutational pathways of a von Neumann self-reproducer within the Avida world. In: European Conference on Complex Systems (ECCS) 2013, 16-20 Sept, 2013, Barcelona, Spain.

Baugh, Declan and McMullin, Barry ORCID: 0000-0002-5789-2068 (2013) Evolution of genotype-phenotype mapping in a von Neumann self-reproduction within the platform of Tierra. In: European Conference on Complex Systems (ECCS) 2013, 16-20 Sept, 2013, Barcelona, Spain.

Kuijk, Fons, Van Broeck, Sigurd, Dareau, Claude, Ravenet, Brian, Ochs, Magalie, Apostolakis, Konstantinos, Daras, Petros ORCID: 0000-0003-3814-6710, Monaghan, David, O'Connor, Noel E. ORCID: 0000-0002-4033-9135, Wall, Julie and Izquierdo, Ebroul ORCID: 0000-0002-7142-3970 (2013) A framework for human-like behavior in an immersive virtual world. In: DSP 2013 18th International Conference on Digital Signal Processing, 1-3 Jul 2013, Santorini, Greece.

Zhou, Lijuan Marissa, Caprani, Niamh and Gurrin, Cathal ORCID: 0000-0003-4395-7702 (2012) ShareDay:A memory enhancing lifelogging system based on group sharing. In: Summer School on Social Media Modeling and Search SSMS 2012, 10-14 Sept 2012, Santorini, Greece.

McMullin, Barry ORCID: 0000-0002-5789-2068 and Hasegawa, Tomonori (2012) Von Neumann redux: revisiting the self-referential logic of machine reproduction using the Avida world. In: EMCSR 2012: European Meeting on Systems and Cybernetics Research, 10-13 Apr 2012, Vienna, Austria.

Decraene, James (2009) Closure in artificial cell signalling networks - investigating the emergence of cognition in collectively autocatalytic reaction networks. In: BIOSIGNALS 2009: The International Conference on Bio-inspired Systems and Signal Processing, 14-17 Jan. 2009, Porto, Portugal. ISBN 978-989-8111-65-4

Decraene, James, Mitchell, George G. and McMullin, Barry ORCID: 0000-0002-5789-2068 (2009) Crosstalk and the cooperation of collectively autocatalytic reaction networks. In: CEC 2009: IEEE Congress on Evolutionary Computation 2009, 18-21 May 2009, Trondheim, Norway.

Decraene, James, Mitchell, George G. and McMullin, Barry ORCID: 0000-0002-5789-2068 (2008) Exploring evolutionary stability in a concurrent artificial chemistry. In: ECCS 2008: 5th European Conference on Complex Systems 2008, 10-19 Sept. 2008, Jerusalem, Israel.

Decraene, James, Mitchell, George G. and McMullin, Barry ORCID: 0000-0002-5789-2068 (2008) Modeling and evolving biochemical networks: insights into communication and computation from the biological domain. In: CIICT 2008: China-Ireland International Conference on Information and Communications Technologies, 26-28 September 2008, Beijing, China. ISBN 9780863419218

Decraene, James, Mitchell, George G. and McMullin, Barry ORCID: 0000-0002-5789-2068 (2008) Unexpected evolutionary dynamics in a string based artificial chemistry. In: Artificial Life XI: the Eleventh International Conference on the Simulation and Synthesis of Living Systems, 5-8 August 2008, Winchester, United Kingdom. ISBN 978-0-262-75017-2

McMullin, Barry ORCID: 0000-0002-5789-2068, Kelly, Ciarán, O'Brien, Darragh, Mitchell, George G. and Decraene, James (2007) Preliminary steps toward artificial protocell computation. In: International Conference on Morphological Computation, 26-28 March 2007, Venice, Italy.

Mitchell, George G., McMullin, Barry ORCID: 0000-0002-5789-2068 and Decraene, James (2007) A cost benefit operator for efficient multi level genetic algorithm searches. In: CEC 2007: IEEE Congress on Evolutionary Computation 2007, 25-28 September 2007, Singapore. ISBN 978-1-4244-1339-3

Decraene, James, Mitchell, George G. and McMullin, Barry ORCID: 0000-0002-5789-2068 (2007) A molecular approach to complex adaptive systems. In: CS2007 - IEEE SMC UK and RI 6th Conference on Cybernetic Systems, 6-7 Sept 2007, Dublin, Ireland.

McMullin, Barry ORCID: 0000-0002-5789-2068, Kelly, Ciarán and O'Brien, Darragh (2007) Multi-level selection in a simple artificial chemistry. In: 9th European Conference, ECAL 2007, 10-14 Sept 2007, Lisbon. ISBN 978-3-540-74913-4

McMullin, Barry ORCID: 0000-0002-5789-2068, Kelly, Ciarán and O'Brien, Darragh (2007) Multi-level selectional stalemate in a simple artificial chemistry. In: ECAL 2007 - 9th European Conference on Artificial Life, 10-14 September, 2007, Lisbon, Portugal. ISBN 978-3-540-74912-7

Decraene, James (2007) On the emergence and evolution of artificial cell signaling networks. In: EvoPhD 2007: The Second European Graduate Student Workshop on Evolutionary Computation, 11-13 April 2007, Valencia, Spain.

Decraene, James, Mitchell, George G. and McMullin, Barry ORCID: 0000-0002-5789-2068 (2007) Studying complex adaptive systems using molecular classifier systems. In: ECCS 2007: European Conference on Complex Systems 2007, 1-5 October 2007, Dresden, Germany.

Decraene, James, Mitchell, George G., Kelly, Ciarán and McMullin, Barry ORCID: 0000-0002-5789-2068 (2006) Evolving artificial cell signaling networks. In: European Conference on Complex Systems (ECCS '06), 25-29 Sept 2006, Oxford, UK.

Kelly, Ciarán, McMullin, Barry ORCID: 0000-0002-5789-2068 and O'Brien, Darragh (2006) On Protocell "Computation". In: European Conference on Complex Systems (ECCS '06), 25-29 Sept 2006, Oxford, UK.

Decraene, James, Mitchell, George G., Kelly, Ciarán and McMullin, Barry ORCID: 0000-0002-5789-2068 (2006) An approach to evolving cell signaling networks in silico. In: 2006 International Workshop on Systems Biology, 17-19 July 2006, Maynooth, Ireland.

Kelly, Ciarán, Decraene, James, Mitchell, George G., McMullin, Barry ORCID: 0000-0002-5789-2068 and O'Brien, Darragh (2006) Cellular computation using classifier systems. In: 2006 International Workshop on Systems Biology, 17-19 July 2006, Maynooth, Ireland.

Decraene, James, Mitchell, George G., Kelly, Ciarán and McMullin, Barry ORCID: 0000-0002-5789-2068 (2006) Evolving artificial cell signaling networks. In: ECCS 2006: European Conference on Complex Systems 2006, 25-29 Sept. 2006, Oxford, United Kingdom.

Decraene, James, Mitchell, George G. and McMullin, Barry ORCID: 0000-0002-5789-2068 (2006) Evolving artificial cell signaling networks using molecular classifier systems. In: BIONETICS '06: The 1st international conference on Bio inspired models of network, information and computing systems, 11-13 December 2006, Cavalese, Italy. ISBN 1-4244-0539-4

McMullin, Barry ORCID: 0000-0002-5789-2068 (2000) Some remarks on autocatalysis and autopoiesis. In: Closure: Emergent Organizations and their Dynamics, 3-5 May 1999, University of Ghent, Belgium.. ISBN 978-1573312493

Book Section

McMullin, Barry ORCID: 0000-0002-5789-2068 and Decraene, James (2011) Evolution of self-maintaining cellular information processing networks. In: Lenaerts, Tom, (ed.) Advances in Artificial Life, ECAL 2011. MIT Press, pp. 530-531. ISBN 978-0-262-29714-1

Decraene, James, Mitchell, George G. and McMullin, Barry ORCID: 0000-0002-5789-2068 (2007) Evolving artificial cell signaling networks: perspectives and methods. In: Dressler, Falko and Carreras, Iacopo, (eds.) Advances in Biologically Inspired Information Systems. Studies in Computational Intelligence, 69 . Springer Berlin / Heidelberg, pp. 165-184. ISBN 978-3-540-72692-0