Townsend, Sue (2009) Genetic engineering of antibody fragments for the detection of illicit drugs. PhD thesis, Dublin City University.
Abstract
The monitoring of illicit drugs is now of major importance. Key areas of analysis
include the detection of illicit use by drivers, workplace testing, forensic investigations
and general monitoring to detect or reduce abuse. Thus, the development of a highly
sensitive and reliable array-based assay for saliva, an assay-friendly matrix for detection
of illicit drugs, would be of major benefit. This thesis describes the production and
affinity maturation of antibodies for the detection of illicit drugs and their application in
ELISA, Biacore surface plasmon resonance -based biosensor assays and, finally, in a
multidrug-based assay.
The first phase of this work focused on the development of a repertoire of antibody
fragments against various illicit drugs including morphine-3-glucuronide (M3G),
amphetamine and tetrahydrocannabinol (THC). Antibody libraries were generated from
murine, avian and leporine immune systems. A number of antibody fragments were
produced, purified and characterised by SDS-PAGE, Western blotting and ELISA.
A pre-characterised, murine anti-M3G, whole IgG structure was used for conversion to
scFv and Fab antibody fragments. This permitted SPR-based comparative studies
regarding the validity of using either scFv or Fab fragments in current high throughput
screening strategies. The Fab fragment revealed an apparent off rate 40-fold higher than
that of the scFv, that did not translate to higher affinity for the target in question. A
murine anti-amphetamine Fab fragment demonstrated a 3-fold higher affinity than that
of the parent IgG clone.
Diverse leporine immune libraries were utilised in the development of novel
recombinant Fab and scFv fragments against amphetamine and THC. Subsequently the
antibodies were solubly expressed in Escherichia coli, and fully characterised with
respect to their binding capabilities on ELISA and Biacore-based analytical platforms.
The next phase of the work involved the in-vitro affinity maturation of the anti-M3G
Fab and anti-THC scFv fragments. The wild-type antibodies were used as templates for
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construction of mutant recombinant antibody libraries. Initial mutagenesis strategies
exploited error prone-PCR, DNA shuffling, light-chain shuffling and various methods
of site-directed mutagenesis to generate improved affinity antibody fragments. Kunklestyle, site-directed mutagenesis, proved to be the most successful method for the
generation of an anti-M3G Fab mutated library. The highest affinity anti-THC clones,
characterised by ELISA, were carried forward for light-chain shuffling and subjected to
specifically-tailored affinity selection conditions. Comparative gene and amino-acid
sequence analyses were carried out on the wild-type and selected mutants and
confirmed the presence of mutations in the selected CDR’s.
The final phase of this research involved the incorporation of the antibodies onto multianalyte assay formats. Optimisations were carried out with respect to immobilisation
strategies, surface chemistries, recombinant antibody fragment selection, use of drugprotein conjugates and detection strategies.
Metadata
Item Type: | Thesis (PhD) |
---|---|
Date of Award: | November 2009 |
Refereed: | No |
Supervisor(s): | O'Kennedy, Richard |
Subjects: | Biological Sciences > Biotechnology Humanities > Biological Sciences > Biotechnology |
DCU Faculties and Centres: | DCU Faculties and Schools > Faculty of Science and Health > School of Biotechnology |
Use License: | This item is licensed under a Creative Commons Attribution-NonCommercial-No Derivative Works 3.0 License. View License |
ID Code: | 14933 |
Deposited On: | 16 Nov 2009 15:25 by Richard O'Kennedy . Last Modified 30 Jul 2021 15:03 |
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