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Mutagenesis and directed evolution in CHO cells to improve bio-production characteristics

Sterritt, Neil (2013) Mutagenesis and directed evolution in CHO cells to improve bio-production characteristics. PhD thesis, Dublin City University.

Abstract
The purpose of this project was to investigate techniques that may be successfully applied to improve the characteristics of a bioprocess relevant mammalian cell line such as CHO (Chinese Hamster Ovary). The first technique explored in this thesis investigates the possibility of gene targeting and knockout using an AAV (adeno associated virus) viral vector. A custom vector was constructed comprised of an insertion cassette flanked by homologous ‘arm’ sequences generated from the region of genomic DNA being targeted. Infecting cells with this virus at an MOI of over 2 x 105 particles per cell, we have demonstrated that this unique genomic locus can be successfully targeted with foreign DNA through homologous recombination in CHO cells, with a targeting frequency of 3.1% calculated in this instance. While single allele knockouts were detected using a DHFR targeting vector, a number of alternative techniques implemented did not successfully isolate homozygous negative mutants, however further work based on the data provided in this study could successfully generate null mutants. The second technique applied is a variation of the directed evolution approach. A gene (TBP) was first selected that is known to be involved at a high level in the global cellular transcriptional machinery and subjected to random mutagenesis to generate a mutant library. When transfected this created a heterogeneous pool of diverse clones with a variety of phenotypes. An environmental stress was then applied for a number of passages to select for clones with suitable advantageous mutations, which were then isolated and characterised. Using this technique we successfully isolated a number of mutant clones with average maximum viable cell densities 53% greater than a control cell line when placed through the same stress selective procedure. This improvement in growth coupled with additional benefits to late culture stage viability contributed to an increase in accumulated integrated viable cell density (viable cell-hours) of over 44%. A transcriptional profiling experiment was also carried out to investigate the underlying cellular mechanisms that may have contributed to these advantageous metabolic changes.
Metadata
Item Type:Thesis (PhD)
Date of Award:November 2013
Refereed:No
Supervisor(s):Barron, Niall and Clynes, Martin
Uncontrolled Keywords:Molecular evolution; AAV
Subjects:Biological Sciences > Biotechnology
Humanities > Biological Sciences > Biotechnology
Biological Sciences > Cell biology
Humanities > Biological Sciences > Cell biology
Biological Sciences > Molecular biology
Humanities > Biological Sciences > Molecular biology
DCU Faculties and Centres:DCU Faculties and Schools > Faculty of Science and Health > School of Biotechnology
Use License:This item is licensed under a Creative Commons Attribution-NonCommercial-No Derivative Works 3.0 License. View License
Funders:Irish Research Council for Science Engineering and Technology
ID Code:18612
Deposited On:22 Nov 2013 14:16 by Niall Barron . Last Modified 03 Aug 2021 12:17
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