Dietlmeier, Julia ORCID: 0000-0001-9980-0910, Garcia-Cabrera, Carles ORCID: 0000-0001-8139-9647, Hashmi, Anam, Curran, Kathleen M. ORCID: 0000-0003-0095-9337 and O'Connor, Noel E. ORCID: 0000-0002-4033-9135 (2023) Cardiac MRI reconstruction from undersampled k-space using double-stream IFFT and a denoising GNA-UNET pipeline. In: MICCAI STACOM CMRxRecon challenge workshop, 12 Oct 2023, Vancouver, Canada. (In Press)
Abstract
In this work, we approach the problem of cardiac Magnetic Resonance Imaging (MRI) image reconstruction from undersampled k-space. This is an inherently ill-posed problem leading to a variety of noise and aliasing artifacts if not appropriately addressed. We propose a two-step double-stream processing pipeline that first reconstructs a noisy sample from the undersampled k-space (frequency domain) using the inverse Fourier transform. Second, in the spatial domain we train a denoising GNA-UNET (enhanced by Group Normalization and Attention layers) on the noisy aliased and fully sampled image data using the Mean Square Error loss function. We achieve competitive results on the leaderboard and show that the algorithmic combination proposed is effective in high-quality MRI reconstruction from undersampled cardiac long-axis and short-axis complex k-space data.
Metadata
Item Type: | Conference or Workshop Item (Poster) |
---|---|
Event Type: | Workshop |
Refereed: | Yes |
Additional Information: | As part of the 26th International Conference on Medical Image Computing and Computer Assisted Intervention |
Uncontrolled Keywords: | Cardiac MRI; Undersampled k-space; Deep Learning; Denoising UNET |
Subjects: | Computer Science > Artificial intelligence Computer Science > Image processing Computer Science > Machine learning |
DCU Faculties and Centres: | DCU Faculties and Schools > Faculty of Engineering and Computing > School of Electronic Engineering Research Institutes and Centres > INSIGHT Centre for Data Analytics |
Publisher: | Springer |
Copyright Information: | © 2023 |
Funders: | SFI 18/CRT/6183, SFI 12/RC/2289_P2 |
ID Code: | 29095 |
Deposited On: | 12 Oct 2023 14:04 by Julia Dietlmeier . Last Modified 12 Oct 2023 14:04 |
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