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Personalised patient stratification and therapeutic development using mass scale single cell analysis

Keartland, Sarah (2024) Personalised patient stratification and therapeutic development using mass scale single cell analysis. Master of Science thesis, Dublin City University.

Abstract
The tumour microenvironment (TME) is a complex system that contains both tumour cells and lymphocytes that have infiltrated a patient's tumour. These lymphocytes can have both antitumorigenic and pro-tumorigenic properties within the complex nature of the TME, also often contributing to tumorigenesis. The lymphocytes within the TME are often made up of a significant number of bystander cells, cells that have little or no mmunogenic effect (Meier and Satpathy, 2022). Single cell analysis and T cell therapy have revolutionised the field of cancer treatment and immunotherapy by providing a personalised approach to patient care. Single cell analysis allows researchers to gain a deeper understanding of the heterogeneity within a tumour and identify specific cells within the tumour microenvironment that may be a potential therapeutic. In this study the development and optimisation of a process that uses RemedyBio’s (the company) Nanoreactor single cell analysis platform and functionalised PDMS assays to screen a patient resected tumour for those rare functionally relevant TILs is discussed. The overall hypothesis is that identifying and expanding only the small subpopulation of TILs that are immunologically functional against a patient’s cancer could lead to a more robust and potent therapeutic. Almost 2 million single T cells were screened using fluorescent based PDMS assays that were developed using both healthy donor T cells and patient TILs from dissociated tumour samples. The process was then further verified using a number of different known target screening methods to ensure the analytical tool, was capable of screening patient samples and detecting cytokines such as IFN-γ and granzyme B at low concentrations from a single cell. Gold standard methods such as ELISA and FACS were also used to assess the TIL population being screened. Analysis of millions of cells from patient TME simultaneously at a multiplexed level offers the potential to develop a more potent, yet less harmful therapeutic for those with currently incurable cancers. Prior to commencing this research, it was unknown if functional cytokine markers for T cell activation and cell killing could be detected from the secretome of a single cell. Initial data shows that IFN-γ and granzyme B can be detected in low concentrations from single cells within a microcapillary array using a sandwich immunoassay with a fluorescent based detection method on APTES treated PDMS.
Metadata
Item Type:Thesis (Master of Science)
Date of Award:August 2024
Refereed:No
Supervisor(s):Loscher, Christine, Leonard, Paul and Freeley, Michael
Subjects:UNSPECIFIED
DCU Faculties and Centres:DCU Faculties and Schools > Faculty of Science and Health
DCU Faculties and Schools > Faculty of Science and Health > School of Biotechnology
Use License:This item is licensed under a Creative Commons Attribution-NonCommercial-No Derivative Works 4.0 License. View License
Funders:Irish Research Council
ID Code:30251
Deposited On:25 Nov 2024 14:07 by Paul Leonard . Last Modified 25 Nov 2024 14:07
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Creative Commons: Attribution-Noncommercial-No Derivative Works 4.0
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