Keartland, Sarah (2024) Personalised patient stratification and therapeutic development using mass scale single cell analysis. Master of Science thesis, Dublin City University.
Abstract
The tumour microenvironment (TME) is a complex system that contains both tumour cells and lymphocytes that have infiltrated a patient's tumour. These lymphocytes can have both antitumorigenic and pro-tumorigenic properties within the complex nature of the TME, also often contributing to tumorigenesis. The lymphocytes within the TME are often made up of a significant number of bystander cells, cells that have little or no
mmunogenic effect (Meier and Satpathy, 2022). Single cell analysis and T cell therapy have revolutionised the field of cancer treatment and immunotherapy by providing a personalised approach to patient care. Single cell analysis allows researchers to gain a deeper understanding of the heterogeneity within a tumour and identify specific cells within the tumour microenvironment that may be a potential therapeutic.
In this study the development and optimisation of a process that uses RemedyBio’s (the company) Nanoreactor single cell analysis platform and functionalised PDMS assays to screen a patient resected tumour for those rare functionally relevant TILs is discussed. The overall
hypothesis is that identifying and expanding only the small subpopulation of TILs that are immunologically functional against a patient’s cancer could lead to a more robust and potent therapeutic. Almost 2 million single T cells were screened using fluorescent based PDMS assays
that were developed using both healthy donor T cells and patient TILs from dissociated tumour samples. The process was then further verified using a number of different known target screening methods to ensure the analytical tool, was capable of screening patient samples and
detecting cytokines such as IFN-γ and granzyme B at low concentrations from a single cell. Gold standard methods such as ELISA and FACS were also used to assess the TIL population being screened.
Analysis of millions of cells from patient TME simultaneously at a multiplexed level offers the potential to develop a more potent, yet less harmful therapeutic for those with currently incurable cancers. Prior to commencing this research, it was unknown if functional cytokine
markers for T cell activation and cell killing could be detected from the secretome of a single cell. Initial data shows that IFN-γ and granzyme B can be detected in low concentrations from single cells within a microcapillary array using a sandwich immunoassay with a fluorescent based detection method on APTES treated PDMS.
Metadata
Item Type: | Thesis (Master of Science) |
---|---|
Date of Award: | August 2024 |
Refereed: | No |
Supervisor(s): | Loscher, Christine, Leonard, Paul and Freeley, Michael |
Subjects: | UNSPECIFIED |
DCU Faculties and Centres: | DCU Faculties and Schools > Faculty of Science and Health DCU Faculties and Schools > Faculty of Science and Health > School of Biotechnology |
Use License: | This item is licensed under a Creative Commons Attribution-NonCommercial-No Derivative Works 4.0 License. View License |
Funders: | Irish Research Council |
ID Code: | 30251 |
Deposited On: | 25 Nov 2024 14:07 by Paul Leonard . Last Modified 25 Nov 2024 14:07 |
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