Tabib, Amanda, Sailaja, Vishwanathan, Seleznev, Andrei, McKeown, Peter C., Downing, Tim, Dent, Craig, Sanchez-Bermejo, Eduardo , Colling, Luana , Spillane, Charles and Balasubramanian, Sureshkumar (2016) A polynucleotide repeat expansion causing temperature-sensitivity persists in wild Irish accessions of arabidopsis thaliana. Frontiers in Plant Science, 7 (1344). ISSN 1664-462X

Downing, Tim (2016) Evolutionary genomics of epidemic visceral leishmaniasis in the Indian subcontinent. Elife, 2016 (5). p. 12613. ISSN 2050-084X

Shaw, C.D., Lonchamp, J., Downing, Tim and Imamura, Hideo (2016) In vitro selection of miltefosine resistance in promastigotes of Leishmania donovani from Nepal: genomic and metabolomic characterisation. Molecular Microbiology, 99 (6). pp. 1134-1148. ISSN 1365-2958

Kelly, Helena and Downing, Tim (2015) Cross platform standardisation and normalisation experimental pipeline for use in the biodiscovery of dysregulated human circulating miRNAs. PLOS ONE, 10 (9). 0137389-0137389. ISSN 1932-6203

Downing, Tim (2015) Tackling drug resistant infection outbreaks of global pandemic Escherichia coli ST131 using evolutionary and epidemiological genomics. Microorganisms, 2015 (3). pp. 236-267. ISSN 2076-2607

Rogers, Matthew B. and Downing, Tim (2014) Genomic confirmation of hybridisation and recent inbreeding in a vector-isolated Leishmania population. Plos genetics, 10 (1). p. 1004092. ISSN 1553-7404

Coughlan, Simone, Barreira, Sofia, Seoighe, Cathal and Downing, Tim (2014) Genome-wide variant discovery using sequence assembly, mapping and population-wide analysis. In: Bioinformatics and data analysis in microbiology. Caister Academic Press.

Connell, Sarah, Meade, Kieran G., Allan, Brenda, Lloyd, Andrew T., Downing, Tim, O'Farrelly, Cliona and Bradley, Daniel G. (2013) Genome-wide association analysis of avian resistance to Campylobacter jejuni colonization identifies risk locus spanning the CDH13 gene. G3, 3 (5). pp. 881-890. ISSN 2160-1836

Mannaert, An, Downing, Tim, Imamura, Hideo and Dujardin, Jean-Claude (2012) Adaptive mechanisms in pathogens: universal aneuploidy in Leishmania. Trends in Parasitology, 28 (9). pp. 370-376. ISSN 1471-4922

Van Aerschot, Manu, Decuypere, Saskia and Downing, Tim (2012) Genetic markers for SSG-resistance in Leishmania donovani and SSG-treatment failure of visceral leishmaniasis patients in the Indian subcontinent. Journal of Infectious Diseases, 206 (5). pp. 752-755. ISSN 1537-6613

Downing, Tim (2012) The battle of the SNPs. Nature Reviews Microbiology, 10 (6). ISSN 1740-1534

Downing, Tim and Imamura, Hideo (2011) Whole genome sequencing of multiple Leishmania donovani clinical isolates provides insights into population structure and mechanisms of drug resistance. Genome Research, 2011 (21). pp. 2143-2156. ISSN 1549-5469

Downing, Tim (2010) Variation in chicken populations may affect the enzymatic activity of lysozyme. Animal Genetics, 41 (2). pp. 213-217. ISSN 1365-2052

Downing, Tim, Cormican, Paul, O'Farrelly, Cliona, Bradley, Daniel G. and Lloyd, Andrew T. (2009) Evidence of the adaptive evolution of immune genes in chicken. BMC Research Notes, 2 (254). ISSN 1756-0500

Downing, Tim (2009) Evidence of balanced diversity at the chicken interleukin 4 receptor alpha chain locus. BMC Evolutionary Biology, 9 (136). ISSN 1471-2148