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The development of hybrid antigene therapeutics using nucleic acid click chemistry

Lauria, Teresa (2020) The development of hybrid antigene therapeutics using nucleic acid click chemistry. PhD thesis, Dublin City University.

Abstract
Given their ability to break single- and double-strand DNA with high selectivity, the design of restriction endonuclease mimics has become an area of considerable research interest. One class of mimetics are copper artificial metallo-nucleases (AMNs) that prompt direct strand scission by oxidatively damaging duplex DNA. Therefore, the formation of metal-catalysed free radicals in the vicinity of nucleic acids provides a viable route to developing artificial gene editing tools. The aim of this research was to develop new copper-based AMNs for selective knockdown of the green fluorescent protein (GFP) gene. To achieve this, a novel pool of gene-targeted biomaterials was developed by hybridising intercalating azide-modified phenanthrene AMNs to triplex formation oligonucleotides (TFOs) using copper-catalysed alkyne-azide cycloaddition (CuAAC) ‘click’ chemistry. Upon isolating the family of AMN-TFO hybrids, the project focused on their triplex formation and stabilisation properties. In the presence of coordinated copper(II) ions and a reductant, AMN-TFOs selectively cleaved the GFP gene fragment and site-specific fragmentation patterns were identified using fluorophore-tagged sequences. Building on this first generation of hybrid AMNs, second generation hybrids were developed by clicking di-copper binding bis-phenanthroline ligands to alkyneTFOs. These di-copper(II) AMN-TFOs were prepared using both CuAAC and strainpromoted azide-alkyne cycloaddition (SPAAC) reactions and cleavage reactions with a GFP gene fragment were compared to first generation mononuclear AMN-TFO hybrids. The final aspect of this work focused on extending this technology to develop a novel class of luminescent probes. To achieve this, polypyridyl ruthenium(II) complexes bearing an azide-phenanthroline handle were prepared and conjugated to alkyne TFOs and their preliminary GFP-targeting and luminescence properties were identified.
Metadata
Item Type:Thesis (PhD)
Date of Award:November 2020
Refereed:No
Supervisor(s):Kellett, Andrew
Uncontrolled Keywords:Click chemistry; Chemical nuclease; DNA triplexes; Copper; DNA damage
Subjects:Physical Sciences > Chemistry
DCU Faculties and Centres:DCU Faculties and Schools > Faculty of Science and Health > School of Chemical Sciences
Use License:This item is licensed under a Creative Commons Attribution-NonCommercial-No Derivative Works 3.0 License. View License
Funders:Marie Skłodowska-Curie Innovative Training Network (ITN) ClickGene (H2020-MSCA-ITN-2014-642023)
ID Code:24946
Deposited On:07 Dec 2020 16:06 by Andrew Kellett . Last Modified 07 Dec 2020 16:06
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