The Operation System (OS) of Aviation Radio Equipment (ARE) includes such elements as equipment, organizational structure, processes, documentation, personnel, measuring equipment, consumables and information resources, and others. When considering the problems of primary design and modernization of OSs, a large number of problems arise that can be solved with the help of intelligent decision support systems. During the operation of ARE, significant material resources are consumed, the amount of which is usually random. Therefore, during design, one of the main tasks is to ensure the minimum costs. This article considers the task of cost optimization within the organizational structure of the repair process. At the same time, the article provides analytical equations that allow to calculate and estimate operational costs for a given organizational structure, tariffs for repair and delivery of equipment components, and failure flow parameters. Attention is also paid to the task of rationalizing the organizational structure of the repair process, taking into account the efficiency of the decision-making procedures depending on the failure type (simple or complex). In addition, the article considers an example of several scenarios for the possible placement of repair enterprises in the airports of Ukraine during the post-war reconstruction period.