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Reversible excision of the wzy locus in Salmonella Typhimurium may aid recovery following phage predation

Charity, Oliver J.D., Thilliez, Gaetan orcid logoORCID: 0000-0001-8650-4477, Al-Khanaq, Haider, Acton, Luke orcid logoORCID: 0000-0001-9116-7866, Kolenda, Rafal orcid logoORCID: 0000-0002-8145-579X, Bawn, Matt orcid logoORCID: 0000-0001-7245-4034, Petrovska, Liljana and Kingsley, Robert A. orcid logoORCID: 0000-0002-0194-6485 (2025) Reversible excision of the wzy locus in Salmonella Typhimurium may aid recovery following phage predation. PLOS Genetics, 21 (5). e1011688. ISSN 1553-7404

Abstract
Bacteriophage (phage) are promising novel antimicrobials but a key challenge to their effective implementation is the rapid emergence of phage resistance. An improved understanding of phage-host interactions is therefore needed. The Anderson phage typing scheme differentiates closely related strains of Salmonella enterica serovar Typhimurium ( S . Typhimurium) based on sensitivity to a panel of phage preparations. Switches in phage type are indicative of changes in phage sensitivity and inform on the dynamics of phage interaction with their host bacteria. We investigated the molecular basis of switches between the relatively phage sensitive S . Typhimurium DT8 and phage resistant DT30 strains that are present in the same phylogenetic clade. DT30 strains emerged from DT8 strains predominantly by deletion of a genomic region affecting the wzy locus encoding an O-antigen polymerase. The deletion site was flanked by two perfect direct repeats designated attL and attR. During broth culture in the presence of a typing phage that used O-antigen as primary receptor the Δ wzy genotype increased in frequency compared with culture in the absence of phage and removal of attL prevented deletion of the wzy locus. Co-culture of S . Typhimurium DT8 with a strain lacking wzy resulted in reversion of the latter to wild type. We propose a model in which reversible deletion of the wzy locus enables recovery of S . Typhimurium DT8 following predation by phage that use O-antigen as their primary receptor. This was consistent with ancestral state reconstruction of DT8 and DT30 phylogeny that supported a model of reversible transition from DT8 to DT30 in natural populations.
Metadata
Item Type:Article (Published)
Refereed:Yes
Uncontrolled Keywords:Bacteriophages; Salmonella typhimurium
Subjects:Biological Sciences > Biochemistry
Humanities > Biological Sciences > Biochemistry
Biological Sciences > Biotechnology
Humanities > Biological Sciences > Biotechnology
DCU Faculties and Centres:DCU Faculties and Schools > Faculty of Science and Health
DCU Faculties and Schools > Faculty of Science and Health > School of Biotechnology
Publisher:Public Library of Science
Official URL:https://journals.plos.org/plosgenetics/article?id=...
Copyright Information:Authors
ID Code:32563
Deposited On:05 May 2026 13:39 by Dr Gaetan Thilliez . Last Modified 05 May 2026 13:39
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