Article

Selvaprakash, Karuppuchamy ORCID: 0000-0002-5748-8145, Sideri, Christiana-Kondylo, Henry, Michael, Efeoglu, Esen, Ryan, David and Meleady, Paula ORCID: 0000-0001-5306-310X (2024) Characterization of the Ubiquitin-Modified Proteome of Recombinant Chinese Hamster Ovary Cells in Response to Endoplasmic Reticulum Stress. Biotechnology Journal, 19 (11). pp. 1-11. ISSN 1860-7314

Cholkar, Abhijit ORCID: 0000-0003-4608-3203, McCann, Ronan ORCID: 0000-0002-2071-0785, Perumal, Gopinath ORCID: 0000-0001-9091-6933, Chatterjee, Suman ORCID: 0000-0001-5263-6930, Swayne, Mark ORCID: 0000-0003-1766-771X, Kinahan, David ORCID: 0000-0003-1968-2016 and Brabazon, Dermot ORCID: 0000-0003-3214-6381 (2023) Advances in laser-based surface texturing for developing antifouling surfaces: A comprehensive review. Applied Surface Science Advances, 18 . ISSN 2666-5239

Hughes, Cian ORCID: 0000-0002-4863-733X, Sreenilayam, Sithara ORCID: 0000-0002-5282-3645 and Brabazon, Dermot ORCID: 0000-0003-3214-6381 (2023) Laser nanostructured gold biosensor for proto-oncogene detection. Scientific Reports, 13 . ISSN 2045-2322

O’Neill, Jessica S., Boyle, Nicola M., Marques Passos, Thayse, Heintz, Katharina, Browne, Wesley R. ORCID: 0000-0001-5063-6961, Quilty, Brid ORCID: 0000-0002-0786-3584 and Pryce, Mary ORCID: 0000-0003-2270-2452 (2023) Photophysical and electrochemical properties of meso-tetrathien-2′-yl porphyrins compared to meso-tetraphenylporphyrin. Journal of Photochemistry & Photobiology, A: Chemistry, 438 . ISSN 1010-6030

Levingstone, Tanya J. ORCID: 0000-0002-9751-2314, Sheehy, Eamon J. ORCID: 0000-0002-2902-4562, Moran, Conor J. ORCID: 0000-0001-6808-5766, Cunniffe, Gráinne M. ORCID: 0000-0001-7085-1706, Diaz Payno, Pedro J. ORCID: 0000-0002-3744-9093, Brady, Robert T., Almeida, Henrique V. ORCID: 0000-0002-3036-3211, Carroll, Simon F., O’Byrne, John ORCID: 0000-0002-7705-4344, Kelly, Daniel J., Brama, Pieter AJ. and O’ Brien, Fergal J. (2022) Evaluation of a co-culture of rapidly isolated chondrocytes and stem cells seeded on tri-layered collagen-based scaffolds in a caprine osteochondral defect model. Biomaterials and Biosystems, 8 . ISSN 2666-5344

Abadie, Thomas, al Ma Awali, Sultan M., Brennan, Brian ORCID: 0000-0003-1869-2140, Briciu Burghina, Ciprian Constantin ORCID: 0000-0001-8682-9116, Tajparast, Mohammad ORCID: 0000-0001-6250-7876, Marques Passos, Thayse, Durkan, John, Holland, Linda ORCID: 0000-0002-0103-0151, Lawler, Jenny ORCID: 0000-0001-9947-0958, Nolan, Kieran ORCID: 0000-0002-7748-9452, Quilty, Brid ORCID: 0000-0002-0786-3584, Fitzsimons, Lorna ORCID: 0000-0002-8783-3755, Regan, Fiona ORCID: 0000-0002-8273-9970 and Delauré, Yan ORCID: 0000-0002-7151-9278 (2022) Oxygen transfer of microbubble clouds in aqueous solutions: application to wastewater. Chemical Engineering Science, 257 . ISSN 0009-2509

Kitching, Michael ORCID: 0000-0002-9884-0790, Inguva, Saikumar ORCID: 0000-0002-7648-3972, Ramani, Meghana ORCID: 0000-0001-7517-7618, Marsili, Enrico ORCID: 0000-0003-3150-1564 and Cahill, Paul A. ORCID: 0000-0002-5385-6502 (2022) Biosynthesis of gold nanoparticles by vascular cells in vitro. Frontiers in Microbiology . ISSN 1664-302X

Wang, Zhengwei ORCID: 0000-0001-7706-553X, O'Dwyer, Kevin ORCID: 0000-0001-7405-9679, Muddiman, Ryan ORCID: 0000-0001-9369-749X, Ward, Tomás E. ORCID: 0000-0002-6173-6607, Camp Jr., Charles H. ORCID: 0000-0002-5805-1842 and Hennelly, Bryan ORCID: 0000-0003-1326-9642 (2022) VECTOR: Very deep convolutional autoencoders for non-resonant background removal in broadband coherent anti-Stokes Raman scattering. Journal of Raman Spectroscopy, 53 (6). pp. 1081-1093. ISSN 0377-0486

Kinahan, David J. ORCID: 0000-0003-1968-2016, Burger, Robert, Lawlor, Daryl, Earlya, Philip L., Vembadi, Abhishek, McArdle, Niamh A. ORCID: 0000-0003-4025-6302, Kilcawley, Niamh, Glynn, Macdara ORCID: 0000-0002-6347-4348 and Ducrée, Jens ORCID: 0000-0002-0366-1897 (2021) Centrifugally automated Solid-Phase Extraction of DNA by immiscible liquid valving and chemically powered centripetal pumping of peripherally stored reagents. Biosensors and Bioelectronics, 9 . ISSN 0956-5663

Fitzgerald, Shane ORCID: 0000-0002-6570-4485, Duffy, Emer ORCID: 0000-0003-4557-6487, Holland, Linda ORCID: 0000-0002-0103-0151 and Morrin, Aoife ORCID: 0000-0003-1061-8528 (2020) Multi-strain volatile profiling of pathogenic and commensal cutaneous bacteria. Scientific Reports, 10 . ISSN 2045-2322

Richards, Chloe, Slaimi, Asma, O'Connor, Noel E. ORCID: 0000-0002-4033-9135, Barrett, Alan, Kwiatkowska, Sandra and Regan, Fiona ORCID: 0000-0002-8273-9970 (2020) Bio-inspired surface texture modification as a viable feature of future aquatic antifouling strategies: a review. International Journal of Molecular Sciences, 21 (14). pp. 1-20. ISSN 1422-0067

Burtenshaw, Denise and Cahill, Paul A. ORCID: 0000-0002-5385-6502 (2019) Natriuretic peptides and the regulation of retinal neovascularization. Arteriosclerosis, Thrombosis, and Vascular Biology, 40 (1). pp. 7-10. ISSN 1079-5642

Rowan, Simon C. ORCID: 0000-0002-4103-4421, Rochfort, Keith D. ORCID: 0000-0003-1198-5952, Piouceau, Lucie, Cummins, Phil, O'Rourke, Malachy ORCID: 0000-0002-1972-2009 and McLoughlin, Paul ORCID: 0000-0001-6200-016X (2018) Pulmonary endothelial permeability and tissue fluid balance depend on the viscosity of the perfusion solution. American Journal of Physiology-Lung Cellular and Molecular Physiology, 315 . pp. 476-484. ISSN 1040-0605

Molony, Claire, McIntyre, Jennifer ORCID: 0000-0001-6418-8960, Maguire, Adrian ORCID: 0000-0003-1626-2737, Hakimjavadi, Roya, Burtenshaw, Denise ORCID: 0000-0002-5958-1773, Di Luca, Mariana, Hennelly, Bryan ORCID: 0000-0003-1326-9642, Byrne, Hugh J. ORCID: 0000-0003-1326-9642 and Cahill, Paul A. ORCID: 0000-0002-5385-6502 (2017) Label-free discrimination analysis of de-differentiated vascular smooth muscle cells, mesenchymal stem cells and their vascular and osteogenic progeny using vibrational spectroscopy. Biochimica et Biophysica Acta (BBA) - Molecular Cell Research, 1865 (2). pp. 343-353. ISSN 0167-4889

Tabib, Amanda, Sailaja, Vishwanathan, Seleznev, Andrei, McKeown, Peter C., Downing, Tim, Dent, Craig, Sanchez-Bermejo, Eduardo , Colling, Luana , Spillane, Charles and Balasubramanian, Sureshkumar (2016) A polynucleotide repeat expansion causing temperature-sensitivity persists in wild Irish accessions of arabidopsis thaliana. Frontiers in Plant Science, 7 (1344). ISSN 1664-462X

Shaw, C.D., Lonchamp, J., Downing, Tim and Imamura, Hideo (2016) In vitro selection of miltefosine resistance in promastigotes of Leishmania donovani from Nepal: genomic and metabolomic characterisation. Molecular Microbiology, 99 (6). pp. 1134-1148. ISSN 1365-2958

Paşcu, Elena I., Cahill, Paul A. ORCID: 0000-0002-5385-6502, Stokes, Joseph ORCID: 0000-0002-6924-1887 and McGuinness, Garrett ORCID: 0000-0002-1023-8667 (2016) Towards functional 3D-stacked electrospun composite scaffolds of PHBV, silk fibroin and nanohydroxyapatite: mechanical properties and surface osteogenic differentiation. Journal of Biomaterials Applications, 30 (9). pp. 1334-1349. ISSN 1530-8022

Loughran, Noeleen B., O'Connell, Mary J., O'Connor, Brendan ORCID: 0000-0002-6857-1614 and Ó Fágáin, Ciarán (2014) Stability properties of an ancient plant peroxidase. Biochimie, 104 . pp. 156-159. ISSN 0300-9084

Nwankire, Charles, Czugala, Monika, Burger, Robert, Fraser, Kevin J. ORCID: 0000-0002-9718-5405, O'Connell, Tríona M., Glennon, Thomas, Onwuliri, Blessing E., Nduaguibe, Isikaku E., Diamond, Dermot ORCID: 0000-0003-2944-4839 and Ducrée, Jens ORCID: 0000-0002-0366-1897 (2014) A portable centrifugal analyser for liver function screening. Biosensors and Bioelectronics, 56 . pp. 352-358. ISSN 1873-4235

Gelmi, Amy, Zanoni, Michele, Higgins, Michael, Gambhir, Sanjeev, Officer, David, Diamond, Dermot ORCID: 0000-0003-2944-4839 and Wallace, Gordon ORCID: 0000-0002-0381-7273 (2013) Optical switching of protein interactions on photosensitive–electroactive polymers measured by atomic force microscopy. Journal of Materials Chemistry, 2013 (1). pp. 2162-2168. ISSN 1364-5501

Audouin, Fabrice, Fox, Mary, Larragy, Ruth, Huang, Jin, O'Connor, Brendan ORCID: 0000-0002-8999-5184, Heise, Andreas ORCID: 0000-0001-5916-8500 and Clarke, Paul A. (2012) Polypeptide-grafted macroporous polyHIPE by surface-initiated N-Carboxyanhydride (NCA) polymerization as a platform for bioconjugation. Macromolecules, 45 . pp. 6127-6135. ISSN 0024-9297

Loughran, Noeleen B., Hinde, Sarah, McCormick-Hill, Sally, Leidal, Kevin, Bloomberg, Sarah, Loughran, Sinéad T., O'Connor, Brendan ORCID: 0000-0002-6857-1614, Ó Fágáin, Ciarán, Nauseef, William and O'Connell, Mary J. (2012) Functional consequence of positive selection revealed through rational mutagenesis of human myeloperoxidase. Molecular Biology and Evolution, 29 (8). pp. 2039-2046. ISSN 1537-1719

MacCormac, Aoife, O'Brien, Emma and O'Kennedy, Richard (2011) The development of a multi-disciplinary educational programme in Biomedical Diagnostics - a novel approach. Journal of Biological Education, 45 (4). pp. 255-261. ISSN 2157-6009

Thompson, Roisin, Creavin, Aileen, O'Connell, Michael, O'Connor, Brendan ORCID: 0000-0002-8999-5184 and Clarke, Paul A. (2011) Optimisation of the enzyme-linked lectin assay for enhanced glycoprotein and glycoconjugate analysis. Analytical Biochemistry, 413 (2). pp. 114-122. ISSN 1096-0309

Alwael, Hassan, Connolly, Damian, Clarke, Paul A., Thompson, Roisin, Twamley, Brendan, O'Connor, Brendan ORCID: 0000-0002-8999-5184 and Paull, Brett (2011) Pipette-tip selective extraction of glycoproteins with lectin modified gold nano-particles on a polymer monolithic phase. The Analyst, 136 . pp. 2619-2628. ISSN 1364-5528

McCaul, Margaret, Sutton, David, Simpson, André J., Spence, Adrian, McNally, David J., Moran, Brian W., Goel, Alok, O'Connor, Brendan, Hart, Kris M. and Kelleher, Brian (2011) Composition of dissolved organic matter within a lacustrine environment. Environmental Chemistry, 8 (2). pp. 146-154. ISSN 1448-2517

O'Brien, Pamela and O'Connor, Brendan (2008) Seprase: An overview of an important matrix serine protease. BBA - Biochimica et Biophysica Acta - Proteins and Proteomics, 1784 (9). pp. 1130-1145. ISSN 1570-9639

Loughran, Noeleen B., O'Connor, Brendan, Ó Fágáin, Ciarán and O'Connell, Mary J. (2008) The phylogeny of the mammalian heme peroxidases and the evolution of their diverse functions. BMC Evolutionary Biology, 8 . pp. 101-111. ISSN 1471-2148

O'Shea, Vincent, Clarke, Paul A., O'Connor, Brendan ORCID: 0000-0002-8999-5184 and Paull, Brett (2007) Evaluation of photografted charged sites within polymer monoliths in capillary columns using contactless conductivity detection. Journal of Separation Science, 30 (17). pp. 3060-3068. ISSN 1615-9306

Kilbane, Zelda, Vaas, Paul-Roman, Ó Cuiv, Padraig and O'Connor, Brendan ORCID: 0000-0002-6857-1614 (2007) Cloning and heterologous expression of bovine pyroglutamyl peptidase type-1 in Escherichia coli : purification , biochemical and kinetic characterisation. Molecular and Cellular Biochemistry, 297 (1-2). pp. 189-197. ISSN 0300-8177

O'Connor, Máire B., Killard, Anthony J. ORCID: 0000-0001-6953-3655, O'Kennedy, Richard, Forster, Robert J. and Smyth, Malcolm R. (2006) Production and characterization of a polyclonal antibody fornext term Os(II) and Ru(II) polypyridyl complexes. Journal of Inorganic Biochemistry, 100 (7). pp. 1252-1259. ISSN 0162-0134

Ruth, Deborah M., McMahon, Gillian and Ó Fágáin, Ciarán (2006) Peptide synthesis by recombinant Fasciola hepatica cathepsin L1. Biochimie, 88 (1). pp. 117-120. ISSN 0300-9084

Collins, Patrick, McMahon, Gillian, O'Brien, Pamela and O'Connor, Brendan ORCID: 0000-0002-6857-1614 (2004) Purification, identification and characterisation of the active site of a Seprase-like activity from bovine serum. International Journal of Biochemistry & Cell Biology, 36 (11). pp. 2320-2333. ISSN 1878-5875

Buckley, Seamus J., Collins, Patrick and O'Connor, Brendan ORCID: 0000-0002-6857-1614 (2004) The purification and characterisation of novel dipeptidyl peptidase IV-like activity from bovine serum. International Journal of Biochemistry & Cell Biology, 36 (7). pp. 1281-1296. ISSN 1357-2725

Dillon, Paul P., Manning, Bernadette M., Daly, Stephen J., Killard, Anthony J. and O'Kennedy, Richard (2003) Production of a recombinant anti-morphine-3-glucuronidenext term single-chain variable fragment (scFv) antibody for the development of a “real-time” biosensor-based immunoassay. Journal of Immunological Methods, 276 (1-2). pp. 151-161. ISSN 0022-1759

McMahon, Gillian, Collins, Patrick and O'Connor, Brendan ORCID: 0000-0002-6857-1614 (2003) Characterisation of the active site of a newly-discovered and potentially significant post-proline cleaving endopeptidase called ZIP using LC-MS. The Analyst, 128 (6). pp. 670-675. ISSN 0003-2654

Daly, Stephen J., Dillon, Paul P., Manning, Bernadette M., Dunne, Lynsey, Killard, Anthony J. and O'Kennedy, Richard (2002) Fv antibodies to aflatoxin B1 derived from a pre-immunized antibody phage display library system. Food and Agricultural Immunology, 14 (4). pp. 255-274. ISSN 1465-3443

Thesis

Giannouli, Maria (2024) Development of phenotypic endpoints as metrics for the assessment of emerging pollutants in daphnids. Master of Science thesis, Dublin City University.

Li, Yongda ORCID: 0000-0002-8849-8370 (2024) Development and application of methods for planetary research. PhD thesis, Dublin City University.

Avella, Giuseppe (2024) Investigating the role of fatty acids in CHO cell culture and the development of novel genome engineering tools. PhD thesis, Dublin City University.

Larkin, Ciara (2023) Examining the TRPV3 cation channel in a culture model of human epidermis. PhD thesis, Dublin City University.

Farrelly, Aaron (2023) Quantifying the antioxidant potential of various plants. Master of Science thesis, Dublin City University.

Berry, Peter (2023) An investigation into approaches and pathways relevant to cellular flocculation in CHO cells. PhD thesis, Dublin City University.

Kerr, Dan (2023) Carbonate chemistry and organic alkalinity in Irish coastal waters. PhD thesis, Dublin City University.

Drago, Paola (2022) Deciphering the function of the human dihydrofolate reductase 2 gene. PhD thesis, Dublin City University.

Coyle, Aleen (2022) The role of selenium in mutagenesis using an in vitro human mutation model. PhD thesis, Dublin City University.

Bookey, Niamh (2022) Unravelling the role of the human dihydrofolate reductase 2 gene. PhD thesis, Dublin City University.

McGivern, Allan (2022) Identifying the responses of freshwater organisms to a range of pollutants and their mixtures. Master of Science thesis, Dublin City University.

McGorman, Bríonna ORCID: 0000-0003-2192-9639 (2022) Click and cut: enzymatic production of chemical nuclease triplex-forming oligonucleotide hybrids with gene-editing applications. PhD thesis, Dublin City University.

Thapa, Asmita (2021) An investigation of mycotoxin induced damage and remediation strategies in porcine intestinal cells. PhD thesis, Dublin City University.

Berselli, Guilherme ORCID: 0000-0002-4112-1218 (2021) Versatile cell membrane models: biomimetic suspended lipid bilayers designed for protein/DNA membrane dynamics and detection. PhD thesis, Dublin City University.

Kaushik, Prashant (2020) Profiling the dynamic changes in the phosphoproteome of Chinese hamster ovary cells. Master of Laws thesis, Dublin City University.

Freeland, Brian ORCID: 0000-0003-3705-5745 (2020) Scale-up of nanoparticle fabrication via laser ablation synthesis in solution. PhD thesis, Dublin City University.

Ferreira, Flavio (2020) High throughput DNA single cell analysis of CHO-K1 cell surface glycosylation using lectin probes. PhD thesis, Dublin City University.

McPartlin, Daniel (2019) Development of recombinant antibody fragments for toxin and microbial contaminant detection and investigations of microcystin and azaspiracid toxicity. PhD thesis, Dublin City University.

Crawley, Aoife (2019) The generation of flexible antibody constructs for the diagnosis and targeted treatment of pancreatic cancer. PhD thesis, Dublin City University.

Burke, Christopher S. (2018) Peptide-directed metal complex luminophores: candidates for photodynamic therapeutics. PhD thesis, Dublin City University.

Loftus, Jonathan (2018) Mycotoxins - an analysis of their immunomodulatory effects and methods for their detection. PhD thesis, Dublin City University.

Tang, Minhong (2018) Targeted delivery of long-acting SNARE-inactivating protease into inflammatory cells and sensory neurons for the treatment of chronic pain. PhD thesis, Dublin City University.

Olayinka, Abidemi (2018) The role of Notch1 Receptor N-glycosylation in the transition of stem cells to vascular smooth muscle cells. PhD thesis, Dublin City University.

Colliton, Keith A. (2018) Impact of lyophilisation conditions on bio conjugate product quality attributes. Master of Science thesis, Dublin City University.

Naughton, Laura (2017) Brush grafted membranes for protein immobilization. Master of Science thesis, Dublin City University.

Monaghan, Donal (2017) Glyco-profiling of the surface of colorectal carcinoma cell lines using lectin probes. PhD thesis, Dublin City University.

Cawley, Jonathan (2017) Investigation of CHO cell surface glycosylation using lectin probes. PhD thesis, Dublin City University.

Gallagher, Mark (2016) Analysis of protein expression in Chinese hamster ovary cells and breast cancer. PhD thesis, Dublin City University.

O'Connell, Tríona M. (2016) Development of new methods to study cell surface glycosylation. PhD thesis, Dublin City University.

Kumar Kaza, Seshu (2016) Functional characterization of recombinant Kv1 channel subtypes in HEK-293 cells for screening of selective inhibitors. PhD thesis, Dublin City University.

Gaul, Vincent (2016) Integrin αIIbβ3: from platelet membrane to biomimetic models. PhD thesis, Dublin City University.

Maher, Seán (2016) Microcavity PDMS and gold substrates for supported lipid bilayers. PhD thesis, Dublin City University.

Kelly, Shane (2016) Proteomic characterisation of clonal populations from a humanlung carcinoma cell line. PhD thesis, Dublin City University.

Briciu Burghina, Ciprian Constantin ORCID: 0000-0001-8682-9116 (2016) Development and deployment of a faecal matter sensor for marine and freshwater environments. PhD thesis, Dublin City University.

Epifanio, Monica (2016) Shewanella loihica PV-4 electroactive biofilms (EABs) grown in potentiostat-controlled electrochemical cells. PhD thesis, Dublin City University.

McLoughlin, Alisha (2016) Staphylococcus aureus mediated disruption of blood-brain barrier phenotype in human brain microvascular endothelial cells. PhD thesis, Dublin City University.

Fitzgerald, Valerie (2015) Tailored bio-molecular screening methodologies for selection of improved antibody lead clones for diagnostic and therapeutic applications. PhD thesis, Dublin City University.

Fitzgerald, Sean (2015) The biological and clinical characterisation and validation of novel biomarkers in colorectal cancer. PhD thesis, Dublin City University.

Mac Cooey, Aoife (2015) The role of mitochondrial folate enzymes in cancer. Master of Science thesis, Dublin City University.

Gaule, Patricia (2015) c-Met/HGF in triple negative breast cancer. PhD thesis, Dublin City University.

McDonald, Bernard (2015) Development of an oral drug delivery platform formulation for the targeted delivery of celecoxib for the chemoprevention and treatment of colorectal cancer. PhD thesis, Dublin City University.

Ozaki, Mari (2015) Investigation of gene specific DNA methylation and folate polymorphisms and their relevance for human health and disease. PhD thesis, Dublin City University.

Reddy, Emily C. (2013) A novel role for thiols in the regulation of platelet function. PhD thesis, Dublin City University.

Harrington, Amy (2013) Investigation of the structure/function relationships of a chitobiase from Photorhabdus luminescens through mutagenic strategies. PhD thesis, Dublin City University.

Hui, Ma (2013) Targeted neurotherapeutics for chronic inflammatory pain. PhD thesis, Dublin City University.

Cassidy, Norah (2013) The investigation of Cry toxins from bacillus thuringiensis and the potential use as novel carbohydrate binding proteins. PhD thesis, Dublin City University.

Tobin, Críonna (2013) Mitochondrial biogenesis, signalling pathways involved, and nutrient interactions in response to high intensity interval running. PhD thesis, Dublin City University.

Burger, Robert (2012) A centrifugal microfluidic platform for capturing, assaying and manipulation of beads and biological cells. PhD thesis, Dublin City University.

Hibbard, Troy (2012) Development of a point-of-care breath ammonia device and its application to non-invasive monitoring of haemodialysis patients. PhD thesis, Dublin City University.

McDermott, Martina (2012) Mechanisms of resistance to lapatinib in HER2 positive breast cancer. PhD thesis, Dublin City University.

Fox, Deirdre (2012) Development and application of novel approaches to quantitate therapeutic drugs in human blood. PhD thesis, Dublin City University.

Ooi, Melissa (2011) Investigation of the intrinsic mechanism of drug resistance in multiple myeloma. PhD thesis, Dublin City University.

Fox, Mary (2011) Protein glycosylation in the gram-negative gamma proteobacterium photorhabdus luminescens. PhD thesis, Dublin City University.

Larragy, Ruth (2011) The cloning , expression and characterisation of bacterial chitin-binding proteins from pseudomonas aeruginosa , serratia marcescens, photorhabdus luminescens and photorhabdus asymbiotica. PhD thesis, Dublin City University.

Roche, Sandra (2011) Development and application of novel analytical methods for molecularly targeted cancer therapeutics. PhD thesis, Dublin City University.

Fitzpatrick, Paul (2010) The Role of LASP-1 in Cardiovascular Disease. PhD thesis, Dublin City University.

Loughran, Noeleen B. (2010) Evolutionary and Paleobiochemical Analyses of Heme Peroxidases. PhD thesis, Dublin City University.

Britto, Mishan (2010) The Role of Moesin in the Vasculature: Regulation and Functions under Mechanotransduction. PhD thesis, Dublin City University.

Eustace, Alexander J. (2010) Investigation of response and resistance to dasatinib in melanoma cell lines. PhD thesis, Dublin City University.

Dimov, Ivan Krastev (2010) Configurable and Up-Scalable Microfluidic Life Science Platform for Cell Based Assays by Gravity Driven Sequential Perfusion and Diffusion. PhD thesis, Dublin City University.

Creavin, Aileen (2010) PA-IIL as a model lectin for the structural and functional characterisation of related lectins. PhD thesis, Dublin City University.

O'Shea, Vincent (2010) The detection by conductivity of he effect of protein tagging on immobilisation within monolith columns and development of a novel free sialic acid detector. PhD thesis, Dublin City University.

McMahon, Kenneth (2009) Structural and functional characterisation of lectins from the PA-IL superfamily. PhD thesis, Dublin City University.

Conway, Catherine (2008) Development and validation of software solutions to eliminate bottlenecks in the application of high-throughput quantitative immunohistochemistry. PhD thesis, Dublin City University.

Stapleton, Sharon (2007) Novel anitbody-based assays for disease and food contaminant detection. PhD thesis, Dublin City University.

Farrington, Keith (2007) The design and characterisation of biomimetic artificial receptors based on molecular imprinting technology. PhD thesis, Dublin City University.

Lucey, Darragh (2006) Spectroelectrochemical analysis of bianthrone monolayers. PhD thesis, Dublin City University.

Fleming, John Patrick (2002) The biodegradation of tallow by Trichoderma harzianum rifai RP1. PhD thesis, Dublin City University.

Buckley, Seamus J. (2001) The purification and characterisation of prolyl oligopeptidase from human saliva and dipeptidyl peptidase IV from bovine serum. PhD thesis, Dublin City University.

O'Brien, Anne Marie (1997) Chemical modification and characterisation of horseradish peroxidase and its derivatives for use in environmental applications. PhD thesis, Dublin City University.

Boyd, Damien Thomas (1994) Analysis of some B-adrenergic agonists in biological matrices after evaluation of various extraction methodologies and determination procedures. PhD thesis, Dublin City University.

O'Brien, John (1993) Studies on a novel insertion sequence, ISR11, isolated from rhizobium leguminosarum biovar viciae. PhD thesis, Dublin City University.

Doyle, Veronica (1993) Studies on the development of assay methods for the measurement of proinsulin. PhD thesis, Dublin City University.

Tan, Liang (1991) Application of estimation techniques to biotechnical processes. Master of Engineering thesis, Dublin City University.

Ryan, Eleanor M. (1991) Ruthenium polypyridyl compounds as luminescent probes for biological materials. PhD thesis, Dublin City University.

Carbury, John (1990) The establishment of a therapeutic monitoring service for digoxin. Master of Science thesis, Dublin City University.

Conference or Workshop Item

Ribero, Laura, Hegarty, Susan, Regan, Fiona and Clinton, Ruth (2024) Urban Citizen's 6.3.2: monitoring Dublin’s rivers and streams through citizen science. In: RRC Annual Conference, 24-26 Apr 2024, Llandudno, UK.

Hou, Yuting, Jing, Ji, Mishra, Rohit ORCID: 0000-0003-4279-4163, Ducrée, Jens ORCID: 0000-0002-0366-1897 and Harrison, Jed (2018) Centrifugal blood sample preparation for metabolite derivatization and analysis by solid matrix laser desorption/ionization mass spectrometry (SMALDI-MS). In: Twenty Second International Conference on Miniaturized Systems for Chemistry and Life Sciences (µTAS 2018), 11-15 Nov 2018., Kaohsiung, Taiwan.

Richards, Chloe, Briciu Burghina, Ciprian Constantin ORCID: 0000-0001-8682-9116 and Regan, Fiona ORCID: 0000-0002-8273-9970 (2018) Assessment of biofilm formation on novel transparent coatings for application to a low cost optical sensor deployed in an estuarine environment. In: Europtrode 2018, 25 - 28 Mar 2018, Naples, Italy.

Diamond, Dermot (2016) Bio-inspired Microfluidics. In: Blood Sweat and Tears II, Nov 1-3, Arlington, Virginia.

Jones, Lisa, Allen, Catherine, Staines, Anthony ORCID: 0000-0001-9161-1357, Regan, Fiona ORCID: 0000-0002-8273-9970 and Lawler, Jenny ORCID: 0000-0001-9947-0958 (2016) Potential sources and environmental fates of certain phthalates. In: EmCon 2016, 20-23 Sept 2016, Sydney, Australia.

King, Damien, O'Connell, Tríona M., Dixit, Chandra, O'Connor, Brendan ORCID: 0000-0002-6857-1614, Walls, Dermot ORCID: 0000-0002-2244-2294 and Ducrée, Jens ORCID: 0000-0002-0366-1897 (2014) Single cell level sequential glycan profiling on a microfluidic lab-in-a-trench platform. In: The 18th International Conference on Miniaturized Systems for Chemistry and Life Sciences µTAS 2014, 26-30 Oct 2014, San Antonio, TX..

Matzeu, Giusy, O'Quigley, Conor, McNamara, Eoghan, Fay, Cormac ORCID: 0000-0001-9104-5527 and Diamond, Dermot ORCID: 0000-0003-2944-4839 (2014) Screen printed electrochemical sensors for real-time sodium monitoring in sweat. In: 3D Bioprinting Symposium, 14-15 May 2014, DCU, Dublin, Ireland.

Coleman, Simon (2014) Next generation analytical platforms for environmental sensing: new technologies for old problems. In: 4th Dissemination Workshop for the Nano4water Cluster, 23-24 Apr 2014, Stockholm, Sweden.

Dixit, Chandra, O'Connell, Tríona M., King, Damien, O'Connor, Brendan ORCID: 0000-0002-6857-1614, Walls, Dermot ORCID: 0000-0002-2244-2294 and Ducrée, Jens ORCID: 0000-0002-0366-1897 (2014) Sequential glycan profiling on a lab-in-a-trench (LiaT) platform. In: IEEE MEMS 2014, 26-30 Jan 2014, San Francisco, CA..

Dixit, Chandra, O'Connell, Tríona M., O'Connor, Brendan ORCID: 0000-0002-6857-1614, Walls, Dermot ORCID: 0000-0002-2244-2294 and Ducrée, Jens ORCID: 0000-0002-0366-1897 (2013) Microfluidic lab-in-a-trench platform: cell capture, manipulation and application in glycobiology. In: uTAS 2013, 27-31 Oct 2013, Freiburg, Germany.

Larragy, Ruth and O'Connor, Brendan ORCID: 0000-0002-6857-1614 (2013) Development of new bioaffinity phases for glycoprotein separation and analysis. In: HPLC 2013, 16-20 Jun 2013, Amsterdam, Netherlands.

Audouin, Fabrice, Larragy, Ruth, O'Connor, Brendan ORCID: 0000-0002-6857-1614 and Heise, Andreas ORCID: 0000-0001-5916-8500 (2013) Protein immobilization on highly functional polymer grafted polyHIPEs. In: EPF 2013 European Polymer Congress, 16-21 Jun 2013, Pisa, Italy.

O'Connor, Brendan ORCID: 0000-0002-6857-1614 (2013) Glycoprotein separation and analysis. In: Invited International Seminar, 3 May 2013, UNICAMP , Campinas , Brazil.

O'Connor, Brendan ORCID: 0000-0002-6857-1614 (2013) Development of novel bioanalytical platforms for the biopharmaceutical industry’. In: Invited International Seminar, 30 Apr 2013, Sao Paulo, Brazil.

Zanoni, Michele, Gelmi, Amy, Higgins, Michael, Wagner, Klaudia, Wagner, Pawel ORCID: 0000-0003-1926-9862, Gambhir, Sanjeev, Wallace, Gordon ORCID: 0000-0002-0381-7273, Officer, David and Diamond, Dermot ORCID: 0000-0003-2944-4839 (2013) Dual control molecular switches: a journey into the nanoworld of spiropyran-functionalized Terthiophene Polymers. In: 8th Symposium ACES meeting, 13-15 Feb 2013, North Wollongong, NSW, Australia.

O'Connell, Tríona M., Dixit, Chandra, O'Connor, Brendan ORCID: 0000-0002-6857-1614, Walls, Dermot ORCID: 0000-0002-2244-2294 and Ducrée, Jens ORCID: 0000-0002-0366-1897 (2013) Seqential glycoprofiling of single cells: A novel approach using lab in a trench. In: Research Day, 19 Jan 2013, DCU, Dublin, Ireland.

Harrington, Amy, Thompson, Roisin, Clarke, Paul A. and O'Connor, Brendan (2013) The study of a prokaryotic glycolytic enzyme. In: Biological Research Day 2013, 8 Jan 2013, DCU, Dublin, Ireland.

Thompson, Roisin, O'Connor, Brendan ORCID: 0000-0002-8999-5184, O'Connell, Michael ORCID: 0000-0002-6857-1614 and Clarke, Paul A. (2012) Recombinant prokaryotic lectins : enhanced tools for glycoprotein analysis and purification. In: Glycosciences Ireland, Oct 2012, NUIG, Galway, Ireland.

Cassidy, Norah, Thompson, Roisin, Clarke, Paul A., Keogh, Damien, O'Connell, Michael and O'Connor, Brendan ORCID: 0000-0002-8999-5184 (2012) Regions of the Cry1Ac toxin predicted to be under positive selection are shown to be the carbohydrate binding sites and can be altered in their glycoprotein target specificity. In: Glycosciences Ireland, 14 Jun 2012, NUIG, Galway, Ireland.

Audouin, Fabrice, Fox, Mary, Larragy, Ruth, O'Connor, Brendan ORCID: 0000-0002-6857-1614 and Heise, Andreas ORCID: 0000-0001-5916-8500 (2012) Design of new highly functional polymer grafted polyhipes for proteins immobilization. In: EUPOC2012 - Porous Polymer Based Systems, 3-7 Jun 2012, Gargnano , Italy.

Zanoni, Michele, Gelmi, Amy, Higgins, Michael, Fraser, Kevin J. ORCID: 0000-0002-9718-5405, Byrne, Robert, Wagner, Klaudia, Gambhir, Sanjeev, Officer, David, Wallace, Gordon and Diamond, Dermot ORCID: 0000-0003-2944-4839 (2012) Spiropryan-terthiophene polymers as multi-stimuli-responsive platforms for biomechanical interactions. In: MRS Spring Meeting 2012, 9-13 Apr 2012, San Francisco.

Danilevics, Ugis, Nesterenko, Ekaterina ORCID: 0000-0002-5010-9755, Thompson, Roisin, Clarke, Paul A., O'Connor, Brendan ORCID: 0000-0002-8999-5184 and Paull, Brett (2011) Gold nano-particle modified silica monolithic micro-columns for selected chromatographic and biological applications. In: Analytical Sciences in Ireland, 10 Nov 2011, UCC, Cork, Ireland.

Cassidy, Norah, Thompson, Roisin, Clarke, Paul A., Keogh, Damien, O'Connor, Brendan ORCID: 0000-0002-8999-5184 and O'Connell, Michael (2011) The investigation of a recombinant GalNAc binding protein from bacillus thuringiensis as a tool for glycan analysis and detection. In: The EMBO meeting, 10-13 Sept 2011, Vienna, Austria.

Thompson, Roisin, Creavin, Aileen, O'Connell, Michael, Clarke, Paul A. and O'Connor, Brendan ORCID: 0000-0002-8999-5184 (2011) Optimisation of the enzyme linked lectin assay (ELLA) for enhanced glycoprotein and glycoconjugate analysis. In: Eurocarb 16, 3-7 Jul 2011, Sorrento, Italy.

Vázquez, Mercedes ORCID: 0000-0002-9770-5562, Nesterenko, Ekaterina ORCID: 0000-0002-5010-9755, Clarke, Paul A., Thompson, Roisin, O'Connor, Brendan ORCID: 0000-0002-6857-1614, Brabazon, Dermot ORCID: 0000-0003-3214-6381 and Paull, Brett (2011) Parallel analysis of glycoproteins using lectin-functionalised monoPLOT columns integrated in micro-fluidic chips. In: Eurocarb 16, 3-7 Jul 2011, Sorrento , Italy.

Keogh, Damien, Larragy, Ruth, Thompson, Roisin, O'Connell, Michael, Clarke, Paul A. and O'Connor, Brendan ORCID: 0000-0002-8999-5184 (2011) Genetically enhanced recombinant lectins for glyco-selective analysis and purification. In: Research Review Day 2011, 16 Jun 2011, DCU, Dublin, Ireland.

Cooke, Colm, Keogh, Damien, Thompson, Roisin, Clarke, Paul A., O'Connor, Brendan ORCID: 0000-0002-8999-5184 and O'Connell, Michael (2011) Exploitation of siderophores for the speciation of iron. In: Research Review Day 2011, 15 Jun 2011, DCU, Dublin, Ireland.

Larragy, Ruth, Thompson, Roisin, Clarke, Paul A., O'Connell, Michael and O'Connor, Brendan ORCID: 0000-0002-8999-5184 (2011) Exploiting prokaryotic chitin-binding proteins for glycan recognition. In: Research Review Day 2011, 15 Jun 2011, DCU, Dublin, Ireland.

Harrington, Amy, Thompson, Roisin, Clarke, Paul A. and O'Connor, Brendan ORCID: 0000-0002-8999-5184 (2011) Glycolytic enzymes - novel carbohydrate binding proteins for glycoprotein analysis. In: Research Review Day 2011, 15 Jun 2011, DCU, Dublin, Ireland.

Thompson, Roisin, Keogh, Damien, O'Connell, Michael, Clarke, Paul A. and O'Connor, Brendan ORCID: 0000-0002-8999-5184 (2011) Production of lectin-affinity matrices for process-scale glycoprotein purification. In: Research Review Day 2011, 15 Jun 2011, DCU, Dublin, Ireland.

Alwael, Hassan, Connolly, Damian, Thompson, Roisin, Twamley, Brendan, O'Connor, Brendan ORCID: 0000-0002-6857-1614 and Paull, Brett (2010) AuNP-Agglomerated monoliths in pipette tips for lectin affinity extraction of glycoproteins. In: 22nd International Ion Chromatography Symposium (IICS), 9 -22 Sept 2010, Cincinnati, USA.

Benito-Lopez, Fernando ORCID: 0000-0003-0699-5507, Byrne, Robert and Diamond, Dermot ORCID: 0000-0003-2944-4839 (2010) Versatile continuous pH monitoring barcode system based in ionogels. In: Pittcon Conference 2010, 28 Feb-05 Mar 2010, Orlando, FL, USA.

Benito-Lopez, Fernando ORCID: 0000-0003-0699-5507, Coyle, Shirley ORCID: 0000-0003-0493-8963, Byrne, Robert, Curto, Vincenzo F. ORCID: 0000-0002-0571-7903 and Diamond, Dermot ORCID: 0000-0003-2944-4839 (2010) “Sweat-on-a-Chip”: Analysing Sweat in Real Time with Disposable Micro-devices. In: The 9th Annual IEEE Conference on Sensors, IEEE Sensors 2010 Conference, November 1-4, 2010, Hawaii.

Larragy, Ruth, Thompson, Roisin and O'Connor, Brendan (2009) The use of chitin binding proteins for glycoprotein analysis. In: Glycosciences Ireland, 18 Jun 2009, NUIG, Galway, Ireland.

Vázquez, Mercedes ORCID: 0000-0002-9770-5562, Benito-Lopez, Fernando ORCID: 0000-0003-0699-5507, Garcia-Cordero, Jose L. ORCID: 0000-0002-3868-7405, Ricco, Antonio J. ORCID: 0000-0002-2355-4984 and Diamond, Dermot ORCID: 0000-0003-2944-4839 (2009) Analysis of biopharma raw materials by electrophoresis microchips with contactless conductivity detection. In: μTAS 2009 - 13th International Conference of Miniaturized Systems for Chemistry and Life Science, Micro Total Analysis Systems, 1-5 November 2009, Jeju, Korea. ISBN 978-0-9798064-2-1

Thompson, Roisin, Clarke, Paul A., Goel, Alok, O'Connell, Michael and O'Connor, Brendan ORCID: 0000-0002-6857-1614 (2008) Lectin based glycoprotein analysis. In: Glycosciences Ireland, 12 Dec 2008, NUIG, Galway, Ireland.

Szczepaniak, Jakub and O'Connor, Brendan ORCID: 0000-0002-6857-1614 (2007) Cloning of hemagglutinin (HA) protein of influenza A virus - Potential for sialic acid linkage discrimination. In: Centre for BioAnalytical Sciences meeting 2007, 6 Oct 2007, DCU, Dublin, Ireland.

Creavin, Aileen and O'Connor, Brendan ORCID: 0000-0002-6857-1614 (2007) Affinity tagging & purification of the fucose binding LecB protein. In: Centre for BioAnalytical Sciences meeting 2007, 10 Jun 2007, DCU, Dublin, Ireland.

Book Section

Ó Fágáin, Ciarán, Cummins, Phil and O'Connor, Brendan (2011) Gel filtration chromatography. In: Walls, Dermot and Loughran, Sinéad T., (eds.) Protein Chromatography. Methods in Molecular Biology, 681 . Humana Publishers Ltd., pp. 25-35. ISBN 978-1-60761-913-0

O'Connor, Brendan and Cummins, Phil (2011) Hydrophobic interaction chromatography. In: Walls, Dermot and Loughran, Sinéad T., (eds.) Protein Chromatography. Methods in Molecular Biology, 681 . Humana Publishers Ltd., pp. 431-439.

Cummins, Phil, Dowling, Oonagh and O'Connor, Brendan ORCID: 0000-0002-6857-1614 (2011) Ion exchange chromatography – basic principles and application. In: Walls, Dermot and Loughran, Sinéad T., (eds.) Protein Chromatography. Methods in Molecular Biology, 681 . Humana Publishers Ltd., pp. 215-229. ISBN 978-1-60761-913-0

Colleary, Sandra and Ó Fágáin, Ciarán (2008) Chemically stabilized subtilisins in peptide synthesis. In: Flynne, William G., (ed.) Biotechnology and bioengineering. Nova Science Publishers, Hauppauge, NY, pp. 75-97. ISBN 978-1-60456-067-1

Mtawae, Karima, O'Connor, Brendan ORCID: 0000-0002-6857-1614 and Ó Fágáin, Ciarán (2007) Stability and kinetic studies on recombinant and variant forms of human pyroglutamyl peptidase I and a single-site variant. In: Biotechnology; Research ,Technology & Applications. Nova Science, pp. 121-142. ISBN 9781604569018