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CA and Monte Carlo models of HIV infection

Mannion, Rachel (2001) CA and Monte Carlo models of HIV infection. Master of Science thesis, Dublin City University.

Abstract
The models presented are discrete Monte Carlo(MC) and Cellular Automata(CA) representations of the interaction of HIV with the immune system. HIV is characterised by the depletion of Helper T cells in the body. Helper T cells are essential to the correct regulation of the immune system. Their degradation leaves the body incapable of defending itself, even against what is usually an unharmful infection. The models consider just four cell types the Macrophage, M, the helper T cell, H , the cytotoxic Killer cell, C and the virus, V. Each cell type can either be in high concentration (1) or low concentration (0). An up d a te of a site consists of nearest-neighbour interaction followed by intra-site interactions. The nearest-neighbour interaction represents the influence of a site’s surroundings on it. The intra-site interactions are Boolean equations which represent a succinct interpretation of HIV infection and its effect on the host immune system. Mutation is considered via a probabilistic parameter P m u t - Each cell type has inherent mobility due to the nearest-neighbour interactions, explicit mobility is explored by a probabilistic parameter Pmob• The MC and CA .simulations differ in their updating, with CA updating is synchronous and with MC it is asynchronous. MC is explored as an alternative to the CA model form. Due to th e Boolean concentrations of the cell types, synchronous (CA) updating leads to overshooting, there is either complete viral dominance or immune dominance and no intermediate state. Asynchronous (MC) updating smoothes these extremes; intermediate states between immuno-dominance and immuno-deficiency exist. These intermediate states offer new insight into the dynamics of HIV and the immune system. Asynchronous updating gives clearly defined growth patterns and this enables th e exploration of critical points. One such critical point is the value of Pmut for which the cross-over between immune dominance and deficiency occurs. Also characteristics of the disease progression such as latency can be investigated.
Metadata
Item Type:Thesis (Master of Science)
Date of Award:2001
Refereed:No
Supervisor(s):Ruskin, Heather J.
Uncontrolled Keywords:Immune system; Cellular automata; HIV (Viruses; Monte Carlo method
Subjects:Mathematics
DCU Faculties and Centres:DCU Faculties and Schools > Faculty of Engineering and Computing > School of Computing
Use License:This item is licensed under a Creative Commons Attribution-NonCommercial-No Derivative Works 3.0 License. View License
ID Code:18984
Deposited On:28 Aug 2013 10:04 by Celine Campbell . Last Modified 26 Apr 2017 10:00
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