Article

Hillmann, Andreas ORCID: 0000-0002-6517-1615, Crane, Martin ORCID: 0000-0001-7598-3126 and Ruskin, Heather J. ORCID: 0000-0001-7101-2242 (2020) Assessing the impact of HIV treatment interruptions using stochastic cellular automata. Journal of Theoretical Biology, 502 . ISSN 0022-5193

Chaudhari, Harshal and Crane, Martin ORCID: 0000-0001-7598-3126 (2020) Cross-correlation dynamics and community structures of cryptocurrencies. Journal of Computational Science, 44 . ISSN 1877-7503

Hillmann, Andreas ORCID: 0000-0002-6517-1615, Crane, Martin ORCID: 0000-0001-7598-3126 and Ruskin, Heather J. ORCID: 0000-0001-7101-2242 (2017) HIV models for treatment interruption: adaptation and comparison. Physica A Statistical Mechanics and its Applications, 483 . pp. 44-56. ISSN 0378-4371

Downing, Tim (2016) Evolutionary genomics of epidemic visceral leishmaniasis in the Indian subcontinent. Elife, 2016 (5). p. 12613. ISSN 2050-084X

Shaw, C.D., Lonchamp, J., Downing, Tim and Imamura, Hideo (2016) In vitro selection of miltefosine resistance in promastigotes of Leishmania donovani from Nepal: genomic and metabolomic characterisation. Molecular Microbiology, 99 (6). pp. 1134-1148. ISSN 1365-2958

Sîrbu, Alina, Kerr, Gráinne, Crane, Martin ORCID: 0000-0001-7598-3126 and Ruskin, Heather J. ORCID: 0000-0001-7101-2242 (2012) RNA-seq vs dual- and single-channel microarray data: sensitivity analysis for differential expression and clustering. PLoS ONE, 7 (12). e50986. ISSN 1932-6203

Li, Na, Crane, Martin ORCID: 0000-0001-7598-3126 and Ruskin, Heather J. ORCID: 0000-0001-7101-2242 (2011) Automatically detecting "significant events" on SenseCam. ERCIM News, 2011 (87).

Sîrbu, Alina, Ruskin, Heather J. and Crane, Martin ORCID: 0000-0001-7598-3126 (2010) Comparison of evolutionary algorithms in gene regulatory network model inference. BMC Bioinformatics, 11 (59). pp. 1471-2205. ISSN 1471-2105

Kerr, Gráinne, Perrin, Dimitri, Ruskin, Heather J. ORCID: 0000-0001-7101-2242 and Crane, Martin ORCID: 0000-0001-7598-3126 (2009) Edge-weighting of gene expression graphs. Advances in Complex Systems, 13 (2). pp. 217-238. ISSN 0219-5259

Thesis

Cartwright, Eoin ORCID: 0000-0002-8870-9772 (2024) Obtaining quantitative information from time series patterns: Insights from SAX, MDL and the Matrix Profile. PhD thesis, Dublin City University.

Mai, Tai Tan ORCID: 0000-0001-6657-0872 (2022) Education as a complex system: an investigation of students’ learning behaviours in programming education using complexity approaches. PhD thesis, Dublin City University.

Hillmann, Andreas ORCID: 0000-0002-6517-1615 (2021) Predicting the outcomes of HIV treatment interruptions using computational modelling. PhD thesis, Dublin City University.

Li, Na (2020) Learning and mining from personal digital archives. PhD thesis, Dublin City University.

Decano, Arun Gonzales ORCID: 0000-0002-6058-6483 (2019) A population phylogenomic analysis of the origin and spread of Escherichia coli sequence type 131 (ST131). PhD thesis, Dublin City University.

Kehoe, Joseph (2017) Replication in agent based models using formal methods and multiple updating strategies. PhD thesis, Dublin City University.

Albadawi, Abdulaleem (2014) On the assessment of numerical interface capturing methods for two fluid flow applications. PhD thesis, Dublin City University.

O'Keeffe, Wayne (2013) Multifluid simulations of the magnetorotational instability in accretion disks around protostars. PhD thesis, Dublin City University.

Bezbradica, Marija ORCID: 0000-0001-9366-5113 (2013) Stochastic computational modelling of complex drug delivery systems. PhD thesis, Dublin City University.

Raghavan, Karthika (2012) Computational micromodel for epigenetic mechanisms. PhD thesis, Dublin City University.

Senthil Kumar, Sundararaj (2009) Computations of bubble dynamics with heat transfer. PhD thesis, Dublin City University.

Barat, Ana (2006) Probabilistic models for drug dissolution. PhD thesis, Dublin City University.

Conference or Workshop Item

Le, Lai Hoang, Nguyen, Hoang D., Crane, Martin ORCID: 0000-0001-7598-3126 and Mai, Tai T. ORCID: 0000-0001-6657-0872 (2024) Multimedia learning analytics feedback in simulation-based training: A brief review. In: The 1st ACM Workshop on AI-Powered Q&A Systems for Multimedia (AIQAM ’24), 10-14 Jun 2024, Phuket, Thailand.

Garrigan, John, Crane, Martin ORCID: 0000-0001-7598-3126 and Bezbradica, Marija ORCID: 0000-0001-9366-5113 (2019) Received total wideband power data analysis: multiscale wavelet analysis of RTWP data in a 3G network. In: MSWiM19: The 22nd ACM International Conference on Modeling, Analysis and Simulation of Wireless and Mobile Systems, 25 - 29 Nov 2019, Miami Beach, USA. ISBN 978-1-4503-6904-6

Cartwright, Eoin, Crane, Martin ORCID: 0000-0001-7598-3126 and Ruskin, Heather J. (2019) Financial Time series: motif discovery and analysis using VALMOD. In: International Conference on Computational Science, 12-14 June, 2019, Faro, Portugal. ISBN 978-3-030-22749-4

Skehin, Tom, Crane, Martin ORCID: 0000-0001-7598-3126 and Bezbradica, Marija (2018) Day ahead forecasting of FAANG stocks using ARIMA, LSTM networks and wavelets. In: The 26th AIAI Irish Conference on Artificial Intelligence and Cognitive Science, 6-7 Dec 2018, Dublin, Ireland.

Bezbradica, Marija ORCID: 0000-0001-9366-5113 and Ruskin, Heather J. (2014) Modelling impact of morphological urban structure and cognitive behaviour on pedestrian flows. In: International Conference on Computational Science and Its Applications, 30 Jun-3 Jul 2014, Guimaraes, Portugal.

Bezbradica, Marija ORCID: 0000-0001-9366-5113, Ruskin, Heather J. and Crane, Martin ORCID: 0000-0001-7598-3126 (2014) Probabilistic pharmaceutical modelling: A comparison between synchronous and asynchronous cellular automata. In: International Conference on Parallel Processing and Applied Mathematics, 8-11 Sep 2016, Warsaw, Poland.

Gurrin, Cathal ORCID: 0000-0003-2903-3968, Ruskin, Heather J. ORCID: 0000-0001-7101-2242, Crane, Martin ORCID: 0000-0001-7598-3126 and Li, Na (2013) Application of statistical physics for the identification of important events in visual lifelogs. In: 2013 IEEE International Conference on Bioinformatics and Biomedicine (IEEE BIBM 2013), 18-21 Dec 2013, Shanghai, China.

Sîrbu, Alina, Crane, Martin ORCID: 0000-0001-7598-3126 and Ruskin, Heather J. ORCID: 0000-0001-7101-2242 (2013) EGIA–evolutionary optimisation of gene regulatory networks, an integrative approach. In: 5th Workshop on Complex Networks - CompleNet 2014, 12-14 Mar 2014, Bologna, Italy. ISBN 978-3-319-05400-1

Perrin, Dimitri ORCID: 0000-0002-4007-5256, Bezbradica, Marija ORCID: 0000-0001-9366-5113, Crane, Martin ORCID: 0000-0001-7598-3126, Ruskin, Heather J. ORCID: 0000-0001-7101-2242 and Duhamel, Christophe (2012) High-performance computing for data analytics. In: IEEE/ACM 16th International Symposium on Distributed Simulation and Real Time Applications, 25-27 Dec 2012, Dublin, Ireland.

Bezbradica, Marija ORCID: 0000-0001-9366-5113, Crane, Martin ORCID: 0000-0001-7598-3126 and Ruskin, Heather J. ORCID: 0000-0001-7101-2242 (2012) Parallelisation strategies for large scale cellular automata frameworks in pharmaceutical modelling. In: International Conference on High Performance Computing and Simulation, HPCS 2012, 2-6 July 2012, Madrid, Spain. ISBN 978-1-4673-2362-8

Bezbradica, Marija ORCID: 0000-0001-9366-5113, Ruskin, Heather J. ORCID: 0000-0001-7101-2242 and Crane, Martin ORCID: 0000-0001-7598-3126 (2011) Modelling drug coatings: a parallel cellular automata model of ethylcellulose-coated microspheres. In: ICBBB 2011 : 2011 International Conference on Bioscience, Biochemistry and Bioinformatics, 26-28 Feb 2011, Sentaosa, Singapore.

Bezbradica, Marija ORCID: 0000-0001-9366-5113, Barat, Ana, Ruskin, Heather J. and Crane, Martin ORCID: 0000-0001-7598-3126 (2010) Probabilistic models for dissolution of ethylcellulose coated microspheres. In: European Simulation and Modelling Conference 2010, 25-27 Oct 2010, Hasselt, Belgium. ISBN 978-90-77381-57-1

Bezbradica, Marija ORCID: 0000-0001-9366-5113, Barat, Ana, Ruskin, Heather J. and Crane, Martin ORCID: 0000-0001-7598-3126 (2010) Probabilistic models for dissolution of ethylcellulose coated microsphere. In: ESM 2010 - European Simulation and Modelling Conference, 25-27 Oct 2010, Hasselt, Belgium. ISBN 978-90-77381-57-1

Sharkasi, Adel, Crane, Martin ORCID: 0000-0001-7598-3126 and Ruskin, Heather J. ORCID: 0000-0001-7101-2242 (2006) Apples and oranges: the difference between the reaction of the emerging and mature markets to crashes. In: Proceedings of 3rd Nikkei Econophysics Symposium - Practical Fruits of Econophysics, November 2004, Tokyo, Japan. ISBN 978-4-431-28914-2

Book Section

Li, Na, Crane, Martin ORCID: 0000-0001-7598-3126 and Ruskin, Heather J. ORCID: 0000-0001-7101-2242 (2013) Visual experience for recognising human activities. In: International Competitions and Final Workshop, EvAAL 2012, July and September 2012. Communications in Computer and Information Science , 362 . Springer, Berlin Heidelberg, pp. 173-185. ISBN 978-3-642-37419-7

Bezbradica, Marija ORCID: 0000-0001-9366-5113, Ruskin, Heather J. ORCID: 0000-0001-7101-2242 and Crane, Martin ORCID: 0000-0001-7598-3126 (2011) Modelling drug coatings: A parallel cellular automata model of ethylcellulose-coated microspheres. In: Proceedings of The International Conference on Bioscience, Biochemistry and Bioinformatics (ICBBB 2011). IACSIT Press, Singapore, pp. 419-424. ISBN 978-981-08-8718-6