2017

Kehoe, Joseph (2017) Replication in agent based models using formal methods and multiple updating strategies. PhD thesis, Dublin City University.

Hillmann, Andreas, Crane, Martin and Ruskin, Heather J. (2017) HIV models for treatment interruption: adaptation and comparison. Physica A Statistical Mechanics and its Applications, 483 . pp. 44-56. ISSN 0378-4371

2016

Downing, Tim (2016) Evolutionary genomics of epidemic visceral leishmaniasis in the Indian subcontinent. Elife, 2016 (5). p. 12613. ISSN 2050-084X

Shaw, C.D., Lonchamp, J., Downing, Tim and Imamura, Hideo (2016) In vitro selection of miltefosine resistance in promastigotes of Leishmania donovani from Nepal: genomic and metabolomic characterisation. Molecular Microbiology, 99 (6). pp. 1134-1148. ISSN 1365-2958

2014

Albadawi, Abdulaleem (2014) On the assessment of numerical interface capturing methods for two fluid flow applications. PhD thesis, Dublin City University.

Bezbradica, Marija and Ruskin, Heather J. (2014) Modelling impact of morphological urban structure and cognitive behaviour on pedestrian flows. In: International Conference on Computational Science and Its Applications, 30 Jun-3 Jul 2014, Guimaraes, Portugal.

Bezbradica, Marija, Ruskin, Heather J. and Crane, Martin (2014) Probabilistic pharmaceutical modelling: A comparison between synchronous and asynchronous cellular automata. In: International Conference on Parallel Processing and Applied Mathematics, 8-11 Sep 2016, Warsaw, Poland.

2013

Gurrin, Cathal, Ruskin, Heather J., Crane, Martin and LI, Na (2013) Application of statistical physics for the identification of important events in visual lifelogs. In: 2013 IEEE International Conference on Bioinformatics and Biomedicine (IEEE BIBM 2013), 18-21 Dec 2013, Shanghai, China.

Sîrbu, Alina, Crane, Martin and Ruskin, Heather J. (2013) EGIA–evolutionary optimisation of gene regulatory networks, an integrative approach. In: 5th Workshop on Complex Networks - CompleNet 2014, 12-14 Mar 2014, Bologna, Italy. ISBN 978-3-319-05400-1

O'Keeffe, Wayne (2013) Multifluid simulations of the magnetorotational instability in accretion disks around protostars. PhD thesis, Dublin City University.

Bezbradica, Marija (2013) Stochastic computational modelling of complex drug delivery systems. PhD thesis, Dublin City University.

LI, Na, Crane, Martin and Ruskin, Heather J. (2013) Visual experience for recognising human activities. In: International Competitions and Final Workshop, EvAAL 2012, July and September 2012. Communications in Computer and Information Science , 362 . Springer, Berlin Heidelberg, pp. 173-185. ISBN 978-3-642-37419-7 (In Press)

2012

Sîrbu, Alina, Kerr, Gráinne, Crane, Martin and Ruskin, Heather J. (2012) RNA-seq vs dual- and single-channel microarray data: sensitivity analysis for differential expression and clustering. PLoS ONE, 7 (12). e50986. ISSN 1932-6203

Perrin, Dimitri, Bezbradica, Marija, Crane, Martin, Ruskin, Heather J. and Duhamel, Christophe (2012) High-performance computing for data analytics. In: IEEE/ACM 16th International Symposium on Distributed Simulation and Real Time Applications, 25-27 Dec 2012, Dublin, Ireland.

Raghavan, Karthika (2012) Computational micromodel for epigenetic mechanisms. PhD thesis, Dublin City University.

Bezbradica, Marija, Crane, Martin and Ruskin, Heather J. (2012) Parallelisation strategies for large scale cellular automata frameworks in pharmaceutical modelling. In: International Conference on High Performance Computing and Simulation, HPCS 2012, 2-6 July 2012, Madrid, Spain. ISBN 978-1-4673-2362-8

2011

Bezbradica, Marija, Ruskin, Heather J. and Crane, Martin (2011) Modelling drug coatings: A parallel cellular automata model of ethylcellulose-coated microspheres. In: Proceedings of The International Conference on Bioscience, Biochemistry and Bioinformatics (ICBBB 2011). IACSIT Press, Singapore, pp. 419-424. ISBN 978-981-08-8718-6

LI, Na, Crane, Martin and Ruskin, Heather J. (2011) Automatically detecting "significant events" on SenseCam. ERCIM News, 2011 (87).

Bezbradica, Marija, Ruskin, Heather J. and Crane, Martin (2011) Modelling drug coatings: a parallel cellular automata model of ethylcellulose-coated microspheres. In: ICBBB 2011 : 2011 International Conference on Bioscience, Biochemistry and Bioinformatics, 26-28 Feb 2011, Sentaosa, Singapore.

2010

Bezbradica, Marija, Barat, Ana, Ruskin, Heather J. and Crane, Martin (2010) Probabilistic models for dissolution of ethylcellulose coated microspheres. In: European Simulation and Modelling Conference 2010, 25-27 Oct 2010, Hasselt, Belgium. ISBN 978-90-77381-57-1

Bezbradica, Marija, Barat, Ana, Ruskin, Heather J. and Crane, Martin (2010) Probabilistic models for dissolution of ethylcellulose coated microsphere. In: ESM 2010 - European Simulation and Modelling Conference, 25-27 Oct 2010, Hasselt, Belgium. ISBN 978-90-77381-57-1

Sîrbu, Alina, Ruskin, Heather J. and Crane, Martin (2010) Comparison of evolutionary algorithms in gene regulatory network model inference. BMC Bioinformatics, 11 (59). pp. 1471-2205. ISSN 1471-2105

2009

Senthil Kumar, Sundararaj (2009) Computations of bubble dynamics with heat transfer. PhD thesis, Dublin City University.

Kerr, Gráinne, Perrin, Dimitri, Ruskin, Heather J. and Crane, Martin (2009) Edge-weighting of gene expression graphs. Advances in Complex Systems, 13 (2). pp. 217-238. ISSN 0219-5259

2006

Barat, Ana (2006) Probabilistic models for drug dissolution. PhD thesis, Dublin City University.

Sharkasi, Adel, Crane, Martin and Ruskin, Heather J. (2006) Apples and oranges: the difference between the reaction of the emerging and mature markets to crashes. In: Proceedings of 3rd Nikkei Econophysics Symposium - Practical Fruits of Econophysics, November 2004, Tokyo, Japan. ISBN 978-4-431-28914-2