2017

Kehoe, Joseph (2017) Replication in agent based models using formal methods and multiple updating strategies. PhD thesis, Dublin City University.

Hillmann, Andreas, Crane, Martin ORCID: 0000-0001-7598-3126 and Ruskin, Heather J. ORCID: 0000-0001-7101-2242 (2017) HIV models for treatment interruption: adaptation and comparison. Physica A Statistical Mechanics and its Applications, 483 . pp. 44-56. ISSN 0378-4371

2016

Downing, Tim (2016) Evolutionary genomics of epidemic visceral leishmaniasis in the Indian subcontinent. Elife, 2016 (5). p. 12613. ISSN 2050-084X

Shaw, C.D., Lonchamp, J., Downing, Tim and Imamura, Hideo (2016) In vitro selection of miltefosine resistance in promastigotes of Leishmania donovani from Nepal: genomic and metabolomic characterisation. Molecular Microbiology, 99 (6). pp. 1134-1148. ISSN 1365-2958

2014

Albadawi, Abdulaleem (2014) On the assessment of numerical interface capturing methods for two fluid flow applications. PhD thesis, Dublin City University.

Bezbradica, Marija ORCID: 0000-0001-9366-5113 and Ruskin, Heather J. ORCID: 0000-0001-7101-2242 (2014) Modelling impact of morphological urban structure and cognitive behaviour on pedestrian flows. In: International Conference on Computational Science and Its Applications, 30 Jun-3 Jul 2014, Guimaraes, Portugal.

Bezbradica, Marija ORCID: 0000-0001-9366-5113, Ruskin, Heather J. ORCID: 0000-0001-7101-2242 and Crane, Martin ORCID: 0000-0001-7598-3126 (2014) Probabilistic pharmaceutical modelling: A comparison between synchronous and asynchronous cellular automata. In: International Conference on Parallel Processing and Applied Mathematics, 8-11 Sep 2016, Warsaw, Poland.

2013

Gurrin, Cathal ORCID: 0000-0003-2903-3968, Ruskin, Heather J. ORCID: 0000-0001-7101-2242, Crane, Martin ORCID: 0000-0001-7598-3126 and LI, Na (2013) Application of statistical physics for the identification of important events in visual lifelogs. In: 2013 IEEE International Conference on Bioinformatics and Biomedicine (IEEE BIBM 2013), 18-21 Dec 2013, Shanghai, China.

Sîrbu, Alina, Crane, Martin ORCID: 0000-0001-7598-3126 and Ruskin, Heather J. ORCID: 0000-0001-7101-2242 (2013) EGIA–evolutionary optimisation of gene regulatory networks, an integrative approach. In: 5th Workshop on Complex Networks - CompleNet 2014, 12-14 Mar 2014, Bologna, Italy. ISBN 978-3-319-05400-1

O'Keeffe, Wayne (2013) Multifluid simulations of the magnetorotational instability in accretion disks around protostars. PhD thesis, Dublin City University.

Bezbradica, Marija ORCID: 0000-0001-9366-5113 (2013) Stochastic computational modelling of complex drug delivery systems. PhD thesis, Dublin City University.

LI, Na, Crane, Martin ORCID: 0000-0001-7598-3126 and Ruskin, Heather J. ORCID: 0000-0001-7101-2242 (2013) Visual experience for recognising human activities. In: International Competitions and Final Workshop, EvAAL 2012, July and September 2012. Communications in Computer and Information Science , 362 . Springer, Berlin Heidelberg, pp. 173-185. ISBN 978-3-642-37419-7 (In Press)

2012

Sîrbu, Alina, Kerr, Gráinne, Crane, Martin ORCID: 0000-0001-7598-3126 and Ruskin, Heather J. ORCID: 0000-0001-7101-2242 (2012) RNA-seq vs dual- and single-channel microarray data: sensitivity analysis for differential expression and clustering. PLoS ONE, 7 (12). e50986. ISSN 1932-6203

Perrin, Dimitri ORCID: 0000-0002-4007-5256, Bezbradica, Marija ORCID: 0000-0001-9366-5113, Crane, Martin ORCID: 0000-0001-7598-3126, Ruskin, Heather J. ORCID: 0000-0001-7101-2242 and Duhamel, Christophe (2012) High-performance computing for data analytics. In: IEEE/ACM 16th International Symposium on Distributed Simulation and Real Time Applications, 25-27 Dec 2012, Dublin, Ireland.

Raghavan, Karthika (2012) Computational micromodel for epigenetic mechanisms. PhD thesis, Dublin City University.

Bezbradica, Marija ORCID: 0000-0001-9366-5113, Crane, Martin ORCID: 0000-0001-7598-3126 and Ruskin, Heather J. ORCID: 0000-0001-7101-2242 (2012) Parallelisation strategies for large scale cellular automata frameworks in pharmaceutical modelling. In: International Conference on High Performance Computing and Simulation, HPCS 2012, 2-6 July 2012, Madrid, Spain. ISBN 978-1-4673-2362-8

2011

Bezbradica, Marija ORCID: 0000-0001-9366-5113, Ruskin, Heather J. ORCID: 0000-0001-7101-2242 and Crane, Martin ORCID: 0000-0001-7598-3126 (2011) Modelling drug coatings: A parallel cellular automata model of ethylcellulose-coated microspheres. In: Proceedings of The International Conference on Bioscience, Biochemistry and Bioinformatics (ICBBB 2011). IACSIT Press, Singapore, pp. 419-424. ISBN 978-981-08-8718-6

LI, Na, Crane, Martin ORCID: 0000-0001-7598-3126 and Ruskin, Heather J. ORCID: 0000-0001-7101-2242 (2011) Automatically detecting "significant events" on SenseCam. ERCIM News, 2011 (87).

Bezbradica, Marija ORCID: 0000-0001-9366-5113, Ruskin, Heather J. ORCID: 0000-0001-7101-2242 and Crane, Martin ORCID: 0000-0001-7598-3126 (2011) Modelling drug coatings: a parallel cellular automata model of ethylcellulose-coated microspheres. In: ICBBB 2011 : 2011 International Conference on Bioscience, Biochemistry and Bioinformatics, 26-28 Feb 2011, Sentaosa, Singapore.

2010

Bezbradica, Marija ORCID: 0000-0001-9366-5113, Barat, Ana, Ruskin, Heather J. ORCID: 0000-0001-7101-2242 and Crane, Martin ORCID: 0000-0001-7598-3126 (2010) Probabilistic models for dissolution of ethylcellulose coated microspheres. In: European Simulation and Modelling Conference 2010, 25-27 Oct 2010, Hasselt, Belgium. ISBN 978-90-77381-57-1

Bezbradica, Marija ORCID: 0000-0001-9366-5113, Barat, Ana, Ruskin, Heather J. ORCID: 0000-0001-7101-2242 and Crane, Martin ORCID: 0000-0001-7598-3126 (2010) Probabilistic models for dissolution of ethylcellulose coated microsphere. In: ESM 2010 - European Simulation and Modelling Conference, 25-27 Oct 2010, Hasselt, Belgium. ISBN 978-90-77381-57-1

Sîrbu, Alina, Ruskin, Heather J. ORCID: 0000-0001-7101-2242 and Crane, Martin ORCID: 0000-0001-7598-3126 (2010) Comparison of evolutionary algorithms in gene regulatory network model inference. BMC Bioinformatics, 11 (59). pp. 1471-2205. ISSN 1471-2105

2009

Senthil Kumar, Sundararaj (2009) Computations of bubble dynamics with heat transfer. PhD thesis, Dublin City University.

Kerr, Gráinne, Perrin, Dimitri, Ruskin, Heather J. ORCID: 0000-0001-7101-2242 and Crane, Martin ORCID: 0000-0001-7598-3126 (2009) Edge-weighting of gene expression graphs. Advances in Complex Systems, 13 (2). pp. 217-238. ISSN 0219-5259

2006

Barat, Ana (2006) Probabilistic models for drug dissolution. PhD thesis, Dublin City University.

Sharkasi, Adel, Crane, Martin ORCID: 0000-0001-7598-3126 and Ruskin, Heather J. ORCID: 0000-0001-7101-2242 (2006) Apples and oranges: the difference between the reaction of the emerging and mature markets to crashes. In: Proceedings of 3rd Nikkei Econophysics Symposium - Practical Fruits of Econophysics, November 2004, Tokyo, Japan. ISBN 978-4-431-28914-2